Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi106g00004 ATGGAGGTGGAGCAGAATCTGCAACCCCTATTTCCCTATTGGAAGCCGCTTCTTCGAAGATTCCGACCTGATTCTCCTTTCTTCGCTCCGGGAAACCTCGAACGTGAACTTCTTGCTAAACAGGTTGCATTGGAATTAACAGAAAAGAAGGAACAGCCTGAGAATTGGATACAAGAGGATGGAAGGGAAGTCTTTTGTCCCATTGTTGGTTGTGGAGCACGCTTGACTTCAATGGAGGACTTTGAAGATCACTATAATGCAAGGCATACTGCATCCTGTTCTGTGTGTTCCAGAGTCTACCCAACATCGCGTCTGCTCAGCATACATGTTTCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGATGTGTATGAATGCTTAGTGGAAGGGTGTGGTTTGAAATTCAAAAGCTACAAAAGTAGGCAGCAGCATCTGGTTGACAAGCATAAATTCCCTGCCTCATTTGAGTTTTGTAAGAAGGCTCGGCCTTCAAAGAAACACAGGCTGAAGTCGCATCGAAAACAAGCTGCTCATAAGGATGATGTTTCAGGATTGATGGAAGTGGAAAATGCACCCATAGATGACCTTGTTTCAGCTGTCTCTAAATTGAGCACTTCTGATTCCACTCCTTCATCTATCAGCTTTGGGCGCCGCCACAAAGGCTTGTCATTTGTCCCTCGAGCTGTTCAGCGTGGAAGTGGATCAAACTCAGCATCGTCCATGACAAATTGA 747 0.4525 MEVEQNLQPLFPYWKPLLRRFRPDSPFFAPGNLERELLAKQVALELTEKKEQPENWIQEDGREVFCPIVGCGARLTSMEDFEDHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDVYECLVEGCGLKFKSYKSRQQHLVDKHKFPASFEFCKKARPSKKHRLKSHRKQAAHKDDVSGLMEVENAPIDDLVSAVSKLSTSDSTPSSISFGRRHKGLSFVPRAVQRGSGSNSASSMTN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi106g00004 248 MobiDBLite consensus disorder prediction 234 248 - -
Gabi106g00004 248 ProSitePatterns Zinc finger C2H2 type domain signature. 131 154 IPR013087 -
Gabi106g00004 248 PANTHER UNCHARACTERIZED 8 237 IPR039258 -
Gabi106g00004 248 SMART c2h2final6 129 154 IPR013087 -
Gabi106g00004 248 SMART c2h2final6 91 114 IPR013087 -
Gabi106g00004 248 SMART c2h2final6 64 89 IPR013087 -
Gabi106g00004 248 ProSitePatterns Zinc finger C2H2 type domain signature. 93 114 IPR013087 -
Gabi106g00004 248 MobiDBLite consensus disorder prediction 229 248 - -
Gabi106g00004 248 ProSitePatterns Zinc finger C2H2 type domain signature. 66 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi106g00004 Gabi-Chr106 14869 22475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi106g00004 1 245 C2H2 Transcription Factor Family AT5G14140 61.176 3.53e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi106g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi106g00004 - - gmx:100819557 413.305