LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1063g00007	ATGGATTCCAATAGCAGCCCATCATCCCGTAATCCAAAGCGGATCTGCACAGCTACAGCTTCCAGTTCTTCCATGGATTCGAGTAACATCCAAAGCAGCACGTCATCTCGGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGCACTGATACTCGCTACTCTTTTGTTGATCATCTTTTGGCTCATCTCTCCAGGAAAGGTCTTTTCGCCTTCAAGGATGACAAACGGCTCGAGGAAGGAGAACCCATTTCATCACAGCTTTTACAAGCAATTCATGATTCACGGGTTTTTATCGTTGTCTTCTCCCCTGATTATGCTTCTTCAAAATGGTGTTTGGATGAAATGGCTTCTATAAATGAATGCCGTATAAATTTGAAACAAACTGTTTTCCCAATTTTCTATCGTGTGGATCCATCTGATGTACGACATCAGCATGGGGTTTATGGGGATGCCTTTGATTTACACTATGAAAAATTCAAACAAGATCTATCCAAGGTTAATCGATGGCAGGAAGCTATGAAGGCTTTGGGCGGTTTAGTTGGTTGGGATGTCGGGAATAAGCCAGAGTTTGGAGAGATTGAAAATATTGTTCAGGCTGTAATAAAAACTTTGGGTCATAAATTCTCAGGGTTTGCTGATAATCTTATTGGGATACAACCTCGTGTTGCTGAATTGGAAAGTCTTTTAAAATTAAGTTTATGGGATGATGATTTTCGAGTTTTGGGAATTTGGGGGATGGATGGAATAGGAAAGACAACTCTTGCTACCGTCTTGTTTGACAAAATCTCTTATCAATTTCCGACTAGCTGTTTTATTGATGACCTAAGCCAAACTTATAAAGATGGTGGTGCTATTGCTGTACAGAGACAAATTCTTTGTCAAACTCTAGATGAAAAAAATCTCGAGAAGTATAGTCCATCTCAAATATCTGGAATTGTAAGGAATAGGCTACACAACATAAAGGTCCTTATAGTTCTTGACAATGTTGATGAATTAGAGCAACTGCAGGAATTAGCAATAAATCCTACATTGCTTTGCTCAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAGAGTGTATGGAGCGGATATAGTTTATGAGGCTCTACTCATGAATGATAATGATGCTCGTCAACTTTTATGTAGAAAAGCCTTCAAAAGGGAAGATTCTAGTAGCAATTTTGCAGAGCTTATCCCTGAGATACTAGAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTTGTGGGTTCTTTTTTATGTACCCGAAATGCCACCCAATGGAGAGCTACCTTGGATGGGCTGTGGAATAATCCAAACAAAAAAATCATAAAAGTGCTTGAGATAGGTTTTGAGGGATTGGAGCAAAGAGAGAGAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGATTATGTAAAGCGAATTCTAGATTGTTGTGGATTAAACCCTGAAATTGGTATCCCCCTTATCACTGAAAAATCACTCATAACCACTAAAAATGAGGAAATTCATATGCATGAAATGTTGCGAGAGTTGGGGAAGCAAATAGTTAGGCAACATTTTTCCGAAGAACCAGGATCCTGGAGTAGATTGTGGCTTCATCGGGATTTCCATCATGTCTTAAGGACAAAAACGGGAACTGATAAGGTTAAAGCCATTGTACTAGATCCAAAAGAGGATGTCCCTGAATGCCCTGGGTGGATTGGTCAAGGATTGTCGCAGATGACAAGCCTTAGACTGCTTATATTATATCATAAGAATTTTTCAGCAAGTCTCGATTTTCTGTCTAACAACCTAAGATATCTTTTGTGGCCTAGTTATCCTTTCACATCTTTGCCATCAGAATTTGAGCCGTATCATCTTGTTGAACTGAATGTGCCTAACAGCAGCATACAACACCTGTGGAAAGGCCACAAGGATCTTCCCCATTTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTATGGAAACTCCAATGTTTGAAGGGATCCCAAAACTTGAGCGGCTAGATTTTACAGGATGTACGAAGTTAAGGCACATCCATCCATCTATTGGACGTCTGACAAAACTTGCTTTCTTGAGTTTGCAAAATTGCATCAATCTGGTCGAGCTTGAGTTCGATTCTGATAGTTTATCTAATTCAAGTTCTCTGAGAGTTCTACACCTATCTGGTTGCACAAATCTTGAAAAGACACCAGATTTTACTGGGGTATCAAATCTCGAGTACCTTGATATGAATCGATGTACAAGTTTGTCAACGGTTCATACATCTATTGGGGCTCTTGAAAAACTTAGATTCTTGAGTTTGAGAGATTGCACAAGTCTTGTCAGTGTACCTAATTCTGTTAACACCATGATCTCTCTTATAACTCTAGATTTATGTGGCTGCATTAAACTTACGACACTGCGGCCCTTCCTATGGAATGTCAATTTTCCCCTAGAATTTCAATCTTTGATTCATATGGACGTAGGCTATTGCAATTTAAGTAAAGTACCTGATGCTATTGGAGAGTTAAGGTATTTGGAAAGACTAAATCTTGAAGGAAACAACTTTGTTTCACTACCTTCTACCACCACCAAGCTTTATAGTCTAGCATATCTAAACTTAGCGCGGTGCCATCAGCTTAAACATATGTGTAATCTCCCATCAAAAAGTGATTCATCAGTGGGAAGGTATTTTAAAACTACATCTGGGTCTCGTGATCATAGGTCAGGATTATATATTTTTGACTGCCCCAAGCTAAAAAATATATTCCCAATTTCCATTGTTCAATGGCTAACAAGACTACTTAAGGAACGCCGTCATTTTCGGTGTGGCTTTGACATCATTATTCCTTGGGAGTGGAAATTTTTTTATTCTGCAACGAATCGTATTCTTCCATGGTGGTTCTGTCATCGATTCAATGGAGGTTCAGTGATAAGAATAGTACACTATGATGTGGTTCACAACTGGATTGGTTTTGCCTTTTGCGCAGCGTTTGAGAAGAACGCTTCGATATGCCATTTAATTTGGAACTGGACAAGATTGATGGCTCAACACATCTTTGGACAATCTATATCTCTTGGGAGCACTGCCATTTTTTGA	3117	0.3908	MDSNSSPSSRNPKRICTATASSSSMDSSNIQSSTSSRRICKYDVFISFRGTDTRYSFVDHLLAHLSRKGLFAFKDDKRLEEGEPISSQLLQAIHDSRVFIVVFSPDYASSKWCLDEMASINECRINLKQTVFPIFYRVDPSDVRHQHGVYGDAFDLHYEKFKQDLSKVNRWQEAMKALGGLVGWDVGNKPEFGEIENIVQAVIKTLGHKFSGFADNLIGIQPRVAELESLLKLSLWDDDFRVLGIWGMDGIGKTTLATVLFDKISYQFPTSCFIDDLSQTYKDGGAIAVQRQILCQTLDEKNLEKYSPSQISGIVRNRLHNIKVLIVLDNVDELEQLQELAINPTLLCSGSRIIITTRDEHILRVYGADIVYEALLMNDNDARQLLCRKAFKREDSSSNFAELIPEILEYAQGLPLAIRVVGSFLCTRNATQWRATLDGLWNNPNKKIIKVLEIGFEGLEQREREIFLHIACFFKGEREDYVKRILDCCGLNPEIGIPLITEKSLITTKNEEIHMHEMLRELGKQIVRQHFSEEPGSWSRLWLHRDFHHVLRTKTGTDKVKAIVLDPKEDVPECPGWIGQGLSQMTSLRLLILYHKNFSASLDFLSNNLRYLLWPSYPFTSLPSEFEPYHLVELNVPNSSIQHLWKGHKDLPHLKRMDLSNSKYLMETPMFEGIPKLERLDFTGCTKLRHIHPSIGRLTKLAFLSLQNCINLVELEFDSDSLSNSSSLRVLHLSGCTNLEKTPDFTGVSNLEYLDMNRCTSLSTVHTSIGALEKLRFLSLRDCTSLVSVPNSVNTMISLITLDLCGCIKLTTLRPFLWNVNFPLEFQSLIHMDVGYCNLSKVPDAIGELRYLERLNLEGNNFVSLPSTTTKLYSLAYLNLARCHQLKHMCNLPSKSDSSVGRYFKTTSGSRDHRSGLYIFDCPKLKNIFPISIVQWLTRLLKERRHFRCGFDIIIPWEWKFFYSATNRILPWWFCHRFNGGSVIRIVHYDVVHNWIGFAFCAAFEKNASICHLIWNWTRLMAQHIFGQSISLGSTAIF	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1063g00007	1038	Gene3D	Ribonuclease Inhibitor	748	942	IPR032675	-
	Gabi1063g00007	1038	Gene3D	Ribonuclease Inhibitor	573	747	IPR032675	-
	Gabi1063g00007	1038	SUPERFAMILY	Toll/Interleukin receptor TIR domain	33	184	IPR035897	-
	Gabi1063g00007	1038	SUPERFAMILY	L domain-like	531	945	-	-
	Gabi1063g00007	1038	PRINTS	Disease resistance protein signature	318	332	-	-
	Gabi1063g00007	1038	PRINTS	Disease resistance protein signature	649	665	-	-
	Gabi1063g00007	1038	PRINTS	Disease resistance protein signature	242	257	-	-
	Gabi1063g00007	1038	PRINTS	Disease resistance protein signature	411	425	-	-
	Gabi1063g00007	1038	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	214	470	IPR027417	-
	Gabi1063g00007	1038	ProSiteProfiles	TIR domain profile.	40	206	IPR000157	GO:0007165
	Gabi1063g00007	1038	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	42	740	IPR044974	GO:0006952
	Gabi1063g00007	1038	Gene3D	-	211	370	IPR027417	-
	Gabi1063g00007	1038	MobiDBLite	consensus disorder prediction	1	31	-	-
	Gabi1063g00007	1038	FunFam	Disease resistance protein (TIR-NBS-LRR class)	38	208	-	-
	Gabi1063g00007	1038	Pfam	TIR domain	41	208	IPR000157	GO:0007165
	Gabi1063g00007	1038	Gene3D	-	377	460	IPR042197	-
	Gabi1063g00007	1038	SMART	till_3	41	181	IPR000157	GO:0007165
	Gabi1063g00007	1038	Pfam	NB-ARC domain	237	444	IPR002182	GO:0043531
	Gabi1063g00007	1038	Gene3D	-	39	210	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1063g00007	Gabi-Chr1063	111134	117846	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1063g00007	657	887	WRKY Transcription Factor Family	AT4G12020	30.303	1.57e-13	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1063g00007	-		-	var:108332841	1185.24