Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1063g00006 ATGGATTCCAATAGCAGCCCATCATCCCGTAATCCAAAGCGGATCTGCACAGCTACAGCTTCCAGTTCTTCCATGGATTCGAGTAACATCCAAAGCAGCACGTCATCTCGGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGCACTGATACTCGCTACTCTTTTGTTGATCATCTTTTGGCTCATCTCTCCAGGAAAGGTCTTTTCGCCTTCAAGGATGACAAACGGCTCGAGGAAGGAGAACCCATTTCATCACAGCTTTTACAAGCAATTCATGATTCACGGGTTTTTATCGTTGTCTTCTCCCCTGATTATGCTTCTTCAAAATGGTGTTTGGATGAAATGGCTTCTATAAATGAATGCCGTATAAATTTGAAACAAACTGTTTTCCCAATTTTCTATCGTGTGGATCCATCTGATGTACGACATCAGCATGGGGTTTATGGGGATGCCTTTGATTTACACTATGAAAAATTCAAACAAGATCTATCCAAGGTTAATCGATGGCAGGAAGCTATGAAGGCTTTGGGCGGTTTAGTTGGTTGGGATGTCGGGAATAAGCCAGAGTTTGGAGAGATTGAAAATATTGTTCAGGCTGTAATAAAAACTTTGGGTCATAAATTCTCAGGGTTTGCTGATAATCTTATTGGGATACAACCTCGTGTTGCTGAATTGGAAAGTCTTTTAAAATTAAGTTTATGGGATGATGATTTTCGAGTTTTGGGAATTTGGGGGATGGATGGAATAGGAAAGACAACTCTTGCTACCGTCTTGTTTGACAAAATCTCTTATCAATTTCCGACTAGCTGTTTTATTGATGACCTAAGCCAAACTTATAAAGATGGTGGTGCTATTGCTGTACAGAGACAAATTCTTTGTCAAACTCTAGATGAAAAAAATCTCGAGAAGTATAGTCCATCTCAAATATCTGGAATTGTAAGGAATAGGCTACACAACATAAAGGTCCTTATAGTTCTTGACAATGTTGATGAATTAGAGCAACTGCAGGAATTAGCAATAAATCCTACATTGCTTTGCTCAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAGAGTGTATGGAGCGGATATAGTTTATGAGGCTCTACTCATGAATGATAATGATGCTCGTCAACTTTTATGTAGAAAAGCCTTCAAAAGGGAAGATTCTAGTAGCAATTTTGCAGAGCTTATCCCTGAGATACTAGAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTTGTGGGTTCTTTTTTATGTACCCGAAATGCCACCCAATGGAGAGCTACCTTGGATGGGCTGTGGAATAATCCAAACAAAAAAATCATAAAAGTGCTTGAGATAGGTTTTGAGGGATTGGAGCAAAGAGAGAGAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGATTATGTAAAGCGAATTCTAGATTGTTGTGGATTAAACCCTGAAATTGGTATCCCCCTTATCACTGAAAAATCACTCATAACCACTAAAAATGAGGAAATTCATATGCATGAAATGTTGCGAGAGTTGGGGAAGCAAATAGTTAGGCAACATTTTTCCGAAGAACCAGGATCCTGGAGTAGATTGTGGCTTCATCGGGATTTCCATCATGTCTTAAGGACAAAAACGGGAACTGATAAGGTTAAAGCCATTGTACTAGATCCAAAAGAGGATGTCCCTGAATGCCCTGGGTGGATTGGTCAAGGATTGTCGCAGATGACAAGCCTTAGACTGCTTATATTATATCATAAGAATTTTTCAGCAAGTCTCGATTTTCTGTCTAACAACCTAAGATATCTTTTGTGGCCTAGTTATCCTTTCACATCTTTGCCATCAGAATTTGAGCCGTATCATCTTGTTGAACTGAATGTGCCTAACAGCAGCATACAACACCTGTGGAAAGGCCACAAGGATCTTCCCCATTTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTATGGAAACTCCAATGTTTGAAGGGATCCCAAAACTTGAGCGGCTAGATTTTACAGGATGTACGAAGTTAAGGCACATCCATCCATCTATTGGACGTCTGACAAAACTTGCTTTCTTGAGTTTGCAAAATTGCATCAATCTGGTCGAGCTTGAGTTCGATTCTGATAGTTTATCTAATTCAAGTTCTCTGAGAGTTCTACACCTATCTGGTTGCACAAATCTTGAAAAGACACCAGATTTTACTGGGGTATCAAATCTCGAGTACCTTGATATGAATCGATGTACAAGTTTGTCAACGGTTCATACATCTATTGGGGCTCTTGAAAAACTTAGATTCTTGAGTTTGAGAGATTGCACAAGTCTTGTCAGTGTACCTAATTCTGTTAACACCATGATCTCTCTTATAACTCTAGATTTATGTGGCTGCATTAAACTTACGACACTGCGGCCCTTCCTATGGAATGTCAATTTTCCCCTAGAATTTCAATCTTTGATTCATATGGACGTAGGCTATTGCAATTTAAGTAAAGTACCTGATGCTATTGGAGAGTTAAGGTATTTGGAAAGACTAAATCTTGAAGGAAACAACTTTGTTTCACTACCTTCTACCACCACCAAGCTTTATAGTCTAGCATATCTAAACTTAGCGCGGTGCCATCAGCTTAAACATATGTGTAATCTCCCATCAAAAAGTGATTCATCAGTGGGAAGGTATTTTAAAACTACATCTGGGTCTCGTGATCATAGGTCAGGATTATATATTTTTGACTGCCCCAAGCTAAAAAATATATTCCCAATTTCCATTGTTCAATGGCTAACAAGACTACTTAAGGAACGCCGTCATTTTCGGTGTGGCTTTGACATCATTATTCCTTGGGAGTGGAAATTTTTTTATTCTGCAACGAATCGTATTCTTCCATGGTGGTTCTGTCATCGATTCAATGGAGGTTCAGTGATAAGAATAGTACACTATGATGTGGTTCACAACTGGATTGGTTTTGCCTTTTGCGCAGCGTTTGAGGTAAACAATCATCCTGCGAATTCTGGTTCTCCACTTTCGTCCTCCTTGCCATTGCCACATCCTTTATATCTTTCTTTTGAAAGTGAATACACAGAAGAACGCTTCGATATGCCATTTAATTTGGAACTGGACAAGATTGATGGCTCAACACATCTTTGGACAATCTATATCTCTTGGGAGCACTGCCATTTTTTGAGAACAGAATCCCGTATCACATTTAAATCTCGCCCAGGTTTGTTGGTGAAGGAATGGGGATTACGCATGTTATTCAAGAAAGATATCTCGGCATTAAAATGGGCATATGAAGGACAAAAAGAGAAAGCAGAAGCAGAAGCAGGTGGTCTTCGCTTTGATTATGTAAAAGAAAATAACAACAGCTCTGAGCCAAAAATCCAACTTCCCTACAATTGGTTGGTTAATGAGGAAGAGGAAGTCGAGAATCTTGAAGCCAAGGCAAAAGAATATAATCTTTCTCATCTGGGCCTTTAG 3504 0.3918 MDSNSSPSSRNPKRICTATASSSSMDSSNIQSSTSSRRICKYDVFISFRGTDTRYSFVDHLLAHLSRKGLFAFKDDKRLEEGEPISSQLLQAIHDSRVFIVVFSPDYASSKWCLDEMASINECRINLKQTVFPIFYRVDPSDVRHQHGVYGDAFDLHYEKFKQDLSKVNRWQEAMKALGGLVGWDVGNKPEFGEIENIVQAVIKTLGHKFSGFADNLIGIQPRVAELESLLKLSLWDDDFRVLGIWGMDGIGKTTLATVLFDKISYQFPTSCFIDDLSQTYKDGGAIAVQRQILCQTLDEKNLEKYSPSQISGIVRNRLHNIKVLIVLDNVDELEQLQELAINPTLLCSGSRIIITTRDEHILRVYGADIVYEALLMNDNDARQLLCRKAFKREDSSSNFAELIPEILEYAQGLPLAIRVVGSFLCTRNATQWRATLDGLWNNPNKKIIKVLEIGFEGLEQREREIFLHIACFFKGEREDYVKRILDCCGLNPEIGIPLITEKSLITTKNEEIHMHEMLRELGKQIVRQHFSEEPGSWSRLWLHRDFHHVLRTKTGTDKVKAIVLDPKEDVPECPGWIGQGLSQMTSLRLLILYHKNFSASLDFLSNNLRYLLWPSYPFTSLPSEFEPYHLVELNVPNSSIQHLWKGHKDLPHLKRMDLSNSKYLMETPMFEGIPKLERLDFTGCTKLRHIHPSIGRLTKLAFLSLQNCINLVELEFDSDSLSNSSSLRVLHLSGCTNLEKTPDFTGVSNLEYLDMNRCTSLSTVHTSIGALEKLRFLSLRDCTSLVSVPNSVNTMISLITLDLCGCIKLTTLRPFLWNVNFPLEFQSLIHMDVGYCNLSKVPDAIGELRYLERLNLEGNNFVSLPSTTTKLYSLAYLNLARCHQLKHMCNLPSKSDSSVGRYFKTTSGSRDHRSGLYIFDCPKLKNIFPISIVQWLTRLLKERRHFRCGFDIIIPWEWKFFYSATNRILPWWFCHRFNGGSVIRIVHYDVVHNWIGFAFCAAFEVNNHPANSGSPLSSSLPLPHPLYLSFESEYTEERFDMPFNLELDKIDGSTHLWTIYISWEHCHFLRTESRITFKSRPGLLVKEWGLRMLFKKDISALKWAYEGQKEKAEAEAGGLRFDYVKENNNSSEPKIQLPYNWLVNEEEEVENLEAKAKEYNLSHLGL 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1063g00006 1167 Coils Coil 1143 1163 - -
Gabi1063g00006 1167 SUPERFAMILY L domain-like 531 946 - -
Gabi1063g00006 1167 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 184 IPR035897 -
Gabi1063g00006 1167 Gene3D - 39 210 IPR035897 -
Gabi1063g00006 1167 FunFam Disease resistance protein (TIR-NBS-LRR class) 38 208 - -
Gabi1063g00006 1167 Gene3D - 377 460 IPR042197 -
Gabi1063g00006 1167 Pfam TIR domain 41 208 IPR000157 GO:0007165
Gabi1063g00006 1167 ProSiteProfiles TIR domain profile. 40 206 IPR000157 GO:0007165
Gabi1063g00006 1167 Gene3D Ribonuclease Inhibitor 749 943 IPR032675 -
Gabi1063g00006 1167 Gene3D Ribonuclease Inhibitor 573 748 IPR032675 -
Gabi1063g00006 1167 MobiDBLite consensus disorder prediction 1 31 - -
Gabi1063g00006 1167 Gene3D - 211 370 IPR027417 -
Gabi1063g00006 1167 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 740 IPR044974 GO:0006952
Gabi1063g00006 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 470 IPR027417 -
Gabi1063g00006 1167 SMART till_3 41 181 IPR000157 GO:0007165
Gabi1063g00006 1167 Pfam NB-ARC domain 237 444 IPR002182 GO:0043531
Gabi1063g00006 1167 PRINTS Disease resistance protein signature 411 425 - -
Gabi1063g00006 1167 PRINTS Disease resistance protein signature 649 665 - -
Gabi1063g00006 1167 PRINTS Disease resistance protein signature 318 332 - -
Gabi1063g00006 1167 PRINTS Disease resistance protein signature 242 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1063g00006 Gabi-Chr1063 100403 117846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1063g00006 657 887 WRKY Transcription Factor Family AT4G12020 30.303 3.76e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1063g00006 - - var:108332841 1320.06