Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1063g00005 ATGGATTCCAATAGCAGCCCATCATCCCGTAATCCAAAGCGGATCTGCACAGCTACAGCTTCCAGTTCTTCCATGGATTCGAGTAACATCCAAAGCAGCACGTCATCTCGGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGCACTGATACTCGCTACTCTTTTGTTGATCATCTTTTGGCTCATCTCTCCAGGAAAGGTCTTTTCGCCTTCAAGGATGACAAACGGCTCGAGGAAGGAGAACCCATTTCATCACAGCTTTTACAAGCAATTCATGATTCACGGGTTTTTATCGTTGTCTTCTCCCCTGATTATGCTTCTTCAAAATGGTGTTTGGATGAAATGGCTTCTATAAATGAATGCCGTATAAATTTGAAACAAACTGTTTTCCCAATTTTCTATCGTGTGGATCCATCTGATGTACGACATCAGCATGGGGTTTATGGGGATGCCTTTGATTTACACTATGAAAAATTCAAACAAGATCTATCCAAGGTTAATCGATGGCAGGAAGCTATGAAGGCTTTGGGCGGTTTAGTTGGTTGGGATGTCGGGAATAAGCCAGAGTTTGGAGAGATTGAAAATATTGTTCAGGCTGTAATAAAAACTTTGGGTCATAAATTCTCAGGGTTTGCTGATAATCTTATTGGGATACAACCTCGTGTTGCTGAATTGGAAAGTCTTTTAAAATTAAGTTTATGGGATGATGATTTTCGAGTTTTGGGAATTTGGGGGATGGATGGAATAGGAAAGACAACTCTTGCTACCGTCTTGTTTGACAAAATCTCTTATCAATTTCCGACTAGCTGTTTTATTGATGACCTAAGCCAAACTTATAAAGATGGTGGTGCTATTGCTGTACAGAGACAAATTCTTTGTCAAACTCTAGATGAAAAAAATCTCGAGAAGTATAGTCCATCTCAAATATCTGGAATTGTAAGGAATAGGCTACACAACATAAAGGTCCTTATAGTTCTTGACAATGTTGATGAATTAGAGCAACTGCAGGAATTAGCAATAAATCCTACATTGCTTTGCTCAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAGAGTGTATGGAGCGGATATAGTTTATGAGGCTCTACTCATGAATGATAATGATGCTCGTCAACTTTTATGTAGAAAAGCCTTCAAAAGGGAAGATTCTAGTAGCAATTTTGCAGAGCTTATCCCTGAGATACTAGAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTTGTGGGTTCTTTTTTATGTACCCGAAATGCCACCCAATGGAGAGCTACCTTGGATGGGCTGTGGAATAATCCAAACAAAAAAATCATAAAAGTGCTTGAGATAGGTTTTGAGGGATTGGAGCAAAGAGAGAGAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAGGATTATGTAAAGCGAATTCTAGATTGTTGTGGATTAAACCCTGAAATTGGTATCCCCCTTATCACTGAAAAATCACTCATAACCACTAAAAATGAGGAAATTCATATGCATGAAATGTTGCGAGAGTTGGGGAAGCAAATAGTTAGGCAACATTTTTCCGAAGAACCAGGATCCTGGAGTAGATTGTGGCTTCATCGGGATTTCCATCATGTCTTAAGGACAAAAACGGGAACTGATAAGGTTAAAGCCATTGTACTAGATCCAAAAGAGGATGTCCCTGAATGCCCTGGGTGGATTGGTCAAGGATTGTCGCAGATGACAAGCCTTAGACTGCTTATATTATATCATAAGAATTTTTCAGCAAGTCTCGATTTTCTGTCTAACAACCTAAGATATCTTTTGTGGCCTAGTTATCCTTTCACATCTTTGCCATCAGAATTTGAGCCGTATCATCTTGTTGAACTGAATGTGCCTAACAGCAGCATACAACACCTGTGGAAAGGCCACAAGGAACGCCGTCATTTTCGGTGTGGCTTTGACATCATTATTCCTTGGGAGTGGAAATTTTTTTATTCTGCAACGAATCGTATTCTTCCATGGTGGTTCTGTCATCGATTCAATGGAGGTTCAGTGATAAGAATAGTACACTATGATGTGGTTCACAACTGGATTGGTTTTGCCTTTTGCGCAGCGTTTGAGGTAAACAATCATCCTGCGAATTCTGGTTCTCCACTTTCGTCCTCCTTGCCATTGCCACATCCTTTATATCTTTCTTTTGAAAGTGAATACACAGAAGAACGCTTCGATATGCCATTTAATTTGGAACTGGACAAGATTGATGGCTCAACACATCTTTGGACAATCTATATCTCTTGGGAGCACTGCCATTTTTTGAGAACAGAATCCCGTATCACATTTAAATCTCGCCCAGGTTTGTTGGTGAAGGAATGGGGATTACGCATGTTATTCAAGAAAGATATCTCGGCATTAAAATGGGCATATGAAGGACAAAAAGAGAAAGCAGAAGCAGAAGCAGGTGGTCTTCGCTTTGATTATGTAAAAGAAAATAACAACAGCTCTGAGCCAAAAATCCAACTTCCCTACAATTGGTTGGTTAATGAGGAAGAGGAAGTCGAGAATCTTGAAGCCAAGGCAAAAGAATATAATCTTTCTCATCTGGGCCTTTAG 2625 0.3966 MDSNSSPSSRNPKRICTATASSSSMDSSNIQSSTSSRRICKYDVFISFRGTDTRYSFVDHLLAHLSRKGLFAFKDDKRLEEGEPISSQLLQAIHDSRVFIVVFSPDYASSKWCLDEMASINECRINLKQTVFPIFYRVDPSDVRHQHGVYGDAFDLHYEKFKQDLSKVNRWQEAMKALGGLVGWDVGNKPEFGEIENIVQAVIKTLGHKFSGFADNLIGIQPRVAELESLLKLSLWDDDFRVLGIWGMDGIGKTTLATVLFDKISYQFPTSCFIDDLSQTYKDGGAIAVQRQILCQTLDEKNLEKYSPSQISGIVRNRLHNIKVLIVLDNVDELEQLQELAINPTLLCSGSRIIITTRDEHILRVYGADIVYEALLMNDNDARQLLCRKAFKREDSSSNFAELIPEILEYAQGLPLAIRVVGSFLCTRNATQWRATLDGLWNNPNKKIIKVLEIGFEGLEQREREIFLHIACFFKGEREDYVKRILDCCGLNPEIGIPLITEKSLITTKNEEIHMHEMLRELGKQIVRQHFSEEPGSWSRLWLHRDFHHVLRTKTGTDKVKAIVLDPKEDVPECPGWIGQGLSQMTSLRLLILYHKNFSASLDFLSNNLRYLLWPSYPFTSLPSEFEPYHLVELNVPNSSIQHLWKGHKERRHFRCGFDIIIPWEWKFFYSATNRILPWWFCHRFNGGSVIRIVHYDVVHNWIGFAFCAAFEVNNHPANSGSPLSSSLPLPHPLYLSFESEYTEERFDMPFNLELDKIDGSTHLWTIYISWEHCHFLRTESRITFKSRPGLLVKEWGLRMLFKKDISALKWAYEGQKEKAEAEAGGLRFDYVKENNNSSEPKIQLPYNWLVNEEEEVENLEAKAKEYNLSHLGL 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1063g00005 874 SUPERFAMILY L domain-like 531 647 - -
Gabi1063g00005 874 SUPERFAMILY "Winged helix" DNA-binding domain 446 551 IPR036390 -
Gabi1063g00005 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 668 IPR044974 GO:0006952
Gabi1063g00005 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 470 IPR027417 -
Gabi1063g00005 874 Gene3D - 39 209 IPR035897 -
Gabi1063g00005 874 ProSiteProfiles TIR domain profile. 40 206 IPR000157 GO:0007165
Gabi1063g00005 874 Gene3D - 210 370 IPR027417 -
Gabi1063g00005 874 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 184 IPR035897 -
Gabi1063g00005 874 MobiDBLite consensus disorder prediction 1 31 - -
Gabi1063g00005 874 Gene3D - 377 460 IPR042197 -
Gabi1063g00005 874 Pfam NB-ARC domain 237 444 IPR002182 GO:0043531
Gabi1063g00005 874 PRINTS Disease resistance protein signature 242 257 - -
Gabi1063g00005 874 PRINTS Disease resistance protein signature 318 332 - -
Gabi1063g00005 874 PRINTS Disease resistance protein signature 411 425 - -
Gabi1063g00005 874 FunFam Disease resistance protein (TIR-NBS-LRR class) 38 208 - -
Gabi1063g00005 874 Pfam TIR domain 41 208 IPR000157 GO:0007165
Gabi1063g00005 874 Coils Coil 850 870 - -
Gabi1063g00005 874 SMART till_3 41 181 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1063g00005 Gabi-Chr1063 100403 117846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1063g00005 42 651 WRKY Transcription Factor Family AT4G12020 31.073 3.08e-70 252