Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1063g00003 ATGGATTCCAGAAAATTCCAAAGCAGCAAGTCATCTCAGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGTACTGATACACGCAACTCTTTTGTTGATCATCTTTTCGCTCATCTCTCCAGAAAAGGTCTTTTTGCCTTCAAGGATGACAAACGGCTCGATAAAGGAGAACCCATTTCAGCACAGCTTTTACAAGCAATTCATGATTCACGAGTTTCTATCGTTGTCTTCTCCCCTGATTATGCTTCTTCGACATGGTGTTTGGATGAAATGGCTTCTATAAACGAATGCCGTAAAAATTTGCAACAAACTGTTTTCCCAATTTTCTATGAAGTGGATCCATCTCATGTACGAAATCATCAGAAGGGGGTATATAAGGATGCCTTTCTTTTACACACTACGAGATTTGAACAAGATCAAGTCAAGGTTAATCGATGGGAAAGAGCTATGAAGGATCTGGCAGGATTAGCTGGTTGGGATGTCAGAAATAAGCCAGAGTCCAAAGAGATTGAAAATATTGTTCACAAGGTAATAAGTATATTGGGTCATAAATTCTCAGGATTTGTCGTTGATGAAGTTATTGGGATGCAACCTCGTGTAGCAACATTAGAAAGCATATTAGAATTAAGCTCACCGGAGGATAAATTTAGAGTTTTGGGAATTTGGGGAATGAGCGGAATAGGAAAAACAACTCTTGCTAGTGCTTTGTATGATAGAATCTCTTATCAGTTTGACGCTTGCTGTTTTATTGGGGACGTAAGCAAAATTTATGGAGATGGTGGTGCTGTTGCCGTGCAGAAACAAATTCTTCGTCAAACTCTAAAAGAAGAAGATGTAGACAAATGCAGTCCTCTTGAAATATCCGGAATCATAACATATAGGTTTCACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTGATGAATCAAAGCAATTACGGGAATTATCTATAAATCCTAAATTGCTTCGTGCAGGAAGTAGAATGATTGTAACCACTAGAGATGAGCATATTCTTAAGGCGTATGGAACAGATATAGTTTATGAGGCTCAACTGATGAAAGATAATGACGCTCGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTTGAGCTGATCCCTGAGATACTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTATTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCAATGGATAGACGCCTTGGATAGATTGAAGAAGAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTCCAAGATGATGAGAAAGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGAGTGGATTATGTAAAGCGAGTTCTAGATGCTTGTGGATTGTACCCTGGCATTGGAATACAACGTTTGATTGAGACATCACTCATAATCATTAAAAATCAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGGAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATTGTGGAGTAGATTGTGGCTTTACCTGGATTTCTATTATGTCTTGATGACAAAAACGGGAACAGACGAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGCCCAAAGCCCTCTGACGATTGCTAGTGCGGAAGGATTGTCGAAGATGACAAGTCTTAGATTGCTCATATTAAATCATATGAAAATTTCAGGAGACCTCAATTTTCTTTCTAACAGCCTGCAATACCTTATGTGGCGCGGTTACCCTTTCACTTCTTTGCCATCCAATTTTGAACCCTATCGTCTTGTTGAATTGAATTTGCGTAATAGCAGCATCCATCGACTGTGGGACGGCCGCAAGGATCTTCCGATTCTTCCCTTTTTAAAAAGGATAGATTTAAGCAATTCTAAAAATCTTATGGAAACTCCAGTCTTTGATGGGATTCCAGAACTCGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCGATTCATCAATTGGAATTTTGAGTAAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAATCTGGTTGGCCTTGATTTTGGCAGTTCCTCTAATTTAAGTTCTATGAGAATTATGGAGCTCTCTGGTTGCACAAAACTTGAAAACATGCCAGATTTTACTGGGGCATCGAATCTTGAGTACCTTGATATTGATCAATGTTCTAGTTTATCTGCTGTTCATGAATCAATTGGAACTCGTACAAAGCTTAGATTCTTGAGTTGTAGAGACTGCACAAGTCTTGTGAGTATACCCTCTAAGGTTTACACCATCGAATCTCTTAAAACTCTTGATTGTCGTGGCTGCTTAATACTTAGAGAATTTCCCCGGGGATGGTTTTTTTATTTTTCTGTGTTCTTTCCAGCTTTGATTCTTCTAGATTTAGGCTTTTGCAATCTAAGTGAAGTACCTGAGGGTATTGGAGAGTTGAAGTGTTTAGAAAGACTAAATCTAGAGGGAAACAACTTTGTTTCATTACCTTCTACTATCGCGGGGCTTGAAAGGCTAGCATATTTAAACTTGGCGCATTGCCATGAGCTTCAATTTTTACTGGGGCTTCCAGTTCCGTGGGGAAGTGATTCATCAGTGGGAAGCTATTTTAAAACGGAATCCGGATCTCGTGATCATAGGTCTGGATTATATATTTTTGATTGCCCCAAGCTGGATGTCGATGAGTGGTTGTTTAACTCTGCAATTGAGTGGCTTCGATGTCTAATTAAGGAACCCCGACACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAATTATTGATTCTTCCTCAAATCAAATTCTTCCTGAGTGGTTCGGACATCAATTTAATGAGGCTTCAGTAAAAAGGATAGAAGATTTTGATGTGAATGACAACTGGAATGGTTTTGCCTTTTGTGTAGCATTTGAGGTAAACAATCATAACGCGATCGCTGGTTCACCAGATTCTTCCTCCTTGTCACGACCACATCATTTTTATCTTTCTTTTGAAAGTGAATTCACGGAAGAATGCTTCGATATGCCACTCAGTTTGGAATTGAACAAGATTGATGGCTCAAAATATCTTTGGATAATCTATATCTCTCGAGAGCATTGCCATTTTGTAAAAACAGGAGCGCGTATCACATTTAAAGCCCGCCCAGGTCTGATGATGAAACAATGGGGATTACGCATGGTAGTCACGAAATATTTGTTTGAACAAGAACTCCATTTTGTCATTAATAATGTAGAAGAAAGCAGCTTGTGCCCTGAAATCCAGCTTCCCTACAATTGGTTGGTTACTGAGGAAGAGGAAGTCGAGAATCATGTAGCAAAGGAGAAAGAAAATAAATTTTCTAATCTGGGCCTTTAG 3402 0.3886 MDSRKFQSSKSSQRICKYDVFISFRGTDTRNSFVDHLFAHLSRKGLFAFKDDKRLDKGEPISAQLLQAIHDSRVSIVVFSPDYASSTWCLDEMASINECRKNLQQTVFPIFYEVDPSHVRNHQKGVYKDAFLLHTTRFEQDQVKVNRWERAMKDLAGLAGWDVRNKPESKEIENIVHKVISILGHKFSGFVVDEVIGMQPRVATLESILELSSPEDKFRVLGIWGMSGIGKTTLASALYDRISYQFDACCFIGDVSKIYGDGGAVAVQKQILRQTLKEEDVDKCSPLEISGIITYRFHKIKVLVVLDNVDESKQLRELSINPKLLRAGSRMIVTTRDEHILKAYGTDIVYEAQLMKDNDARQLLCRKAFKSDDSSSNFVELIPEILKYAKGLPLVISVLGSFLCTRDAPQWIDALDRLKKNPDKDIMDVLRLSFDGLQDDEKEIFLHIACFFKGERVDYVKRVLDACGLYPGIGIQRLIETSLIIIKNQKIHMHEMLQELGKHIVRQQFPQEPGLWSRLWLYLDFYYVLMTKTGTDEVKAIVLDQKDAQSPLTIASAEGLSKMTSLRLLILNHMKISGDLNFLSNSLQYLMWRGYPFTSLPSNFEPYRLVELNLRNSSIHRLWDGRKDLPILPFLKRIDLSNSKNLMETPVFDGIPELERLDLTGCTNLHHVDSSIGILSKLAFLSLQNCSNLVGLDFGSSSNLSSMRIMELSGCTKLENMPDFTGASNLEYLDIDQCSSLSAVHESIGTRTKLRFLSCRDCTSLVSIPSKVYTIESLKTLDCRGCLILREFPRGWFFYFSVFFPALILLDLGFCNLSEVPEGIGELKCLERLNLEGNNFVSLPSTIAGLERLAYLNLAHCHELQFLLGLPVPWGSDSSVGSYFKTESGSRDHRSGLYIFDCPKLDVDEWLFNSAIEWLRCLIKEPRHFRCGFDIVIPWDWKIIDSSSNQILPEWFGHQFNEASVKRIEDFDVNDNWNGFAFCVAFEVNNHNAIAGSPDSSSLSRPHHFYLSFESEFTEECFDMPLSLELNKIDGSKYLWIIYISREHCHFVKTGARITFKARPGLMMKQWGLRMVVTKYLFEQELHFVINNVEESSLCPEIQLPYNWLVTEEEEVENHVAKEKENKFSNLGL 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1063g00003 1133 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 693 IPR044974 GO:0006952
Gabi1063g00003 1133 Pfam NB-ARC domain 211 422 IPR002182 GO:0043531
Gabi1063g00003 1133 Pfam Leucine Rich Repeat 609 625 IPR011713 -
Gabi1063g00003 1133 PRINTS Disease resistance protein signature 702 718 - -
Gabi1063g00003 1133 PRINTS Disease resistance protein signature 389 403 - -
Gabi1063g00003 1133 PRINTS Disease resistance protein signature 220 235 - -
Gabi1063g00003 1133 PRINTS Disease resistance protein signature 296 310 - -
Gabi1063g00003 1133 Pfam TIR domain 17 179 IPR000157 GO:0007165
Gabi1063g00003 1133 Gene3D - 355 438 IPR042197 -
Gabi1063g00003 1133 Pfam C-JID domain 952 1078 IPR045344 -
Gabi1063g00003 1133 ProSiteProfiles TIR domain profile. 16 183 IPR000157 GO:0007165
Gabi1063g00003 1133 Gene3D Ribonuclease Inhibitor 548 696 IPR032675 -
Gabi1063g00003 1133 SUPERFAMILY L domain-like 549 866 - -
Gabi1063g00003 1133 Gene3D Ribonuclease Inhibitor 698 798 IPR032675 -
Gabi1063g00003 1133 Gene3D Ribonuclease Inhibitor 799 976 IPR032675 -
Gabi1063g00003 1133 SMART till_3 17 158 IPR000157 GO:0007165
Gabi1063g00003 1133 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 185 - -
Gabi1063g00003 1133 Gene3D - 15 188 IPR035897 -
Gabi1063g00003 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Gabi1063g00003 1133 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Gabi1063g00003 1133 Gene3D - 191 349 IPR027417 -
Gabi1063g00003 1133 SUPERFAMILY "Winged helix" DNA-binding domain 425 528 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1063g00003 Gabi-Chr1063 56256 70856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1063g00003 700 865 WRKY Transcription Factor Family AT4G12020 34.731 9.06e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1063g00003 - - var:108332841 1278.85