Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1060g00018 ATGGACGTTCGAGCACTAGCAAAGAAAAGCTGCAGGGATTGCCATACAACCATGACCCCTCTATGGAGGGCTGGTCCAGATGGACAAAGGTCTCTTTGCAAAGCATGTGGGATAAGATACAGAAAAAGGAGGAGGGCTATTCTAGATTTGGATAAAGGAGGAGCAAAGAAAAGTAGAAAGAAGAATAGAACAAGAAGAGGCCATGCAAATAAGGTATTGATGAATTTTGGTCGAAACATGGAGCAGCACCCATTACTTGGAAGGCAAATCAAGTTAAAAGAGGAAGAAGAGGCAGCTATGTTGTTGATGGCTCTTTCTTGTGGTTTTCTCTGTACTTATTAG 342 0.424 MDVRALAKKSCRDCHTTMTPLWRAGPDGQRSLCKACGIRYRKRRRAILDLDKGGAKKSRKKNRTRRGHANKVLMNFGRNMEQHPLLGRQIKLKEEEEAAMLLMALSCGFLCTY 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1060g00018 113 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 45 - -
Gabi1060g00018 113 CDD ZnF_GATA 10 61 IPR000679 GO:0006355|GO:0043565
Gabi1060g00018 113 Pfam GATA zinc finger 11 45 IPR000679 GO:0006355|GO:0043565
Gabi1060g00018 113 SMART GATA_3 5 67 IPR000679 GO:0006355|GO:0043565
Gabi1060g00018 113 Gene3D - 6 75 IPR013088 GO:0006355|GO:0008270
Gabi1060g00018 113 ProSiteProfiles GATA-type zinc finger domain profile. 5 41 IPR000679 GO:0006355|GO:0043565
Gabi1060g00018 113 PANTHER OS01G0976800 PROTEIN 8 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1060g00018 Gabi-Chr1060 185681 186637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1060g00018 8 110 C2C2-Gata Transcription Factor Family AT5G49300 44.248 5.22e-22 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1060g00018 GATA 7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1060g00018 - - adu:107492392 129.413