Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1060g00017 ATGTCTGATCATATTCACACCTTACCCCCAAAACTATTTGGTTTCCCACTAACAAAGCACGAAGAATTTGCAGAAAGAAAATATGATGTTGGAGAAGACAGAAAATTCAGGTGCCACTTTTGCAGGCGAGTATTCACAAACTCGCAGGCCCTAGGGGGCCACCAGAATGCTCACAAGAAAGAGCGCCAAAGGGCGAGGCTTTTCCAAATCCAGAGTGACCATAGCCATAGGCGCTCCATAGCTTCTGCCTCTGCCTCTGTCCTCACCTCACATGCATTGAGATCACCGCAGACATTACCCTCCACCTTTGATCATCCCCAACAATTGCAATCCAACACAAAGCACTTCCCATCACGACCTATTTTGATTCCTTCTTCAACCTATCGTACTACTCCATTGGTTACTTTTCAGCTTTATCCGTCACCCACTGTACTGCAATCTGCTCCTAATGTCGGTGAATTTTCTGGTAAACTTCCCGAGAGGGATGTCGGTGTTAATGTTGATGTCCATCTCAAATTGTCTCTCTCAGATTGA 534 0.4569 MSDHIHTLPPKLFGFPLTKHEEFAERKYDVGEDRKFRCHFCRRVFTNSQALGGHQNAHKKERQRARLFQIQSDHSHRRSIASASASVLTSHALRSPQTLPSTFDHPQQLQSNTKHFPSRPILIPSSTYRTTPLVTFQLYPSPTVLQSAPNVGEFSGKLPERDVGVNVDVHLKLSLSD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1060g00017 177 Gene3D Classic Zinc Finger 18 93 - -
Gabi1060g00017 177 PANTHER ZINC FINGER PROTEIN 5 27 175 IPR044299 GO:0010090
Gabi1060g00017 177 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Gabi1060g00017 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gabi1060g00017 177 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1060g00017 Gabi-Chr1060 168634 169167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1060g00017 9 73 C2H2 Transcription Factor Family AT5G06650 42.667 4.30e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1060g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1060g00017 - - aprc:113861015 201.445