Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1060g00005 ATGGTAGAGGTTGTCTTGCTAGTCGATGATTTGAAATTACTTTCTGGGATATCTCGCTGTAGAATATGTCACGAAGAAGAGTTTGAGAGCTCAAAAAGCTTGGAAGCACCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGAAATATGAACCTGGATTTACAGCAAGCCCAAAGAAGGCTCAGATAATTGATGAAGCAATGTCCATTAGGAGAGAGCAAGAAGCGTCAAACGCAAGAATAGAGGCTGTGGTTGAAGGAGTTGCAATAGAAAGAGATTACTCTGAATGCAGCTCTGCCACTGACAGAAACGCGTCTTGCTGTCGATCACTGGCATTAGCTTTTACAGTTGTATTACTTGTAAGACATCTTTTCGCAGCGCTTACAAATGGAACGGAAGATTACCCGTTTACACTTCTTACAGTCATTATACTAAAGGCTAGCGGAATTATTATACCCATGTACATAATTATCAGGACGATCGCAGCCATTCAGAACAGTGTTCGGCGCCACTATCAGGATTCTGGCCACGACACATCAATGTCTGATGAAGATGACGATAGTGAGACAGTGCATAATGCAAATTTGAGACATTCATAG 663 0.4178 MVEVVLLVDDLKLLSGISRCRICHEEEFESSKSLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQKYEPGFTASPKKAQIIDEAMSIRREQEASNARIEAVVEGVAIERDYSECSSATDRNASCCRSLALAFTVVLLVRHLFAALTNGTEDYPFTLLTVIILKASGIIIPMYIIIRTIAAIQNSVRRHYQDSGHDTSMSDEDDDSETVHNANLRHS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1060g00005 220 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Gabi1060g00005 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 78 IPR013083 -
Gabi1060g00005 220 SMART ringv_2 19 68 IPR011016 GO:0008270
Gabi1060g00005 220 SUPERFAMILY RING/U-box 19 72 - -
Gabi1060g00005 220 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Gabi1060g00005 220 CDD RING_CH-C4HC3_MARCH 20 67 - -
Gabi1060g00005 220 MobiDBLite consensus disorder prediction 194 220 - -
Gabi1060g00005 220 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Gabi1060g00005 220 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Gabi1060g00005 220 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 192 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1060g00005 Gabi-Chr1060 43394 45600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1060g00005 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.50e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1060g00005 - - gmx:100802379 327.02