Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1060g00003 ATGGTTTTGTGGCCTTCATCTTTCGTCATCGTGCTGGCATACATTGTTCTTTTCATATTGCCGCCATGCTGGTATGTCATGGTGACACGTATCGAGCAGCATGTGAATTTGAATTCAAAAAATGTTCTTTCACAATTTCAATCAGAAATTGAGCATTCAGCTACACTGATACACCCTATGAATTCGTCCTCAACAAATTTTGCAAGATTTATGAGTTCAACCCTCAAAACTACTAACATCTCATTCTCTGAGATTGAGACCAAGGTGGCTCCGTTATTATTTCAAGCATTTGAGACGGTTCCTCACTTAGCCCAAATCTCTTACATTGGGATGGATGGTCATTTTTTCTCATATTACACTGATCATGATCAAGCTATGGCAATGTACTCAAACGCATCATCATCTTCGAATTCTACTTGGGGTACCTTAAATACAACCGTATATTACATCCAGCCTGTAAATCGTGACACAGGAGAGTTATATGGGGAAGCCATAAAATCTAATTCCTCTATCAATGCAAGTGGGGTTGCGGAAGCAATTAATAGTTCTTATGGGTATGCTTCTTTGGGAACCAAGTGGAACAATGGTCATGATCTTCTATTCATTAGTTCAGCCAGAATCACAAGAACAGGAGTGATCTCTCTAGGTTTTCCAGCAAAATCAATAACTAATTTTTTAACTCCTATTGGTCATCTAGGTGCCAGCTTGTATTTGGCTACCAAAGATGGCCAAGTGCTTGTAGAAGGGATCCACGATACTCGTATGATCATTTCAAATGATACGGTTTCCTTTCAATCAGTGAATGCAAATGATGATCAAACAAGCACTGTTTCATGCAAAGGTGGAGTGGTTGCTTCAATTTTGAATATTCGGGATGTTGAGTATTTAATTCACTGCTCCCCCATTGATATAATGGGAATAAAATCGGTGTATGTTTTGGCTATTCCACAAAATGCATTGGTCCGCTTTGTTCTCAACATTAAGAAAATTGCATTGGCACTATTGACTGTGATGATGGTAACGACATTCATTGCCATAGTCTGTTTTCTATTTATAAATACTAGATCTGCTAGGCGTGAAATGCAGAGTATGAATAAGAGTCTTGCTCTTGCTAAGGCTAGCCATGACATTCGCGCTGGGCTTGCTGTCCTTACTGGTTTGATAGATCAGATGTCATATGAGGAAGTTGTCTCTGGTTCAGAATTACAGACCAACTTAAAACAAATGGATTCTTGTACAAAAGATTTACTAGGACTCTTGAATAATATACTTGATGCAAGCAAAATTGAAGCAGGGAAAATGCGTCTTGAGGAAGAGGAATTTGATATATTCCAACTCCTAGAAGAAGTAGTTGATTTATACCATCCCGTGGCTATGAAGAAAGGAGTAGATCTCGTATTAGACCCTTGTAATGGTTCTCTACTGAGATATTCACGTGTGAAAGGCGACAGAGGAAAACTCAAACAAGTTTTTTCCAATTTACTGAGCAATGCTATCAAATTTACTGATGAGGGGTACATAGCAGTTCGGGCATGGGCTCAAAAGAGCTCAATAATCACTACTAACAGAAACAGCTTCAGGAGACATTTGTCACGCTTATTTTATAGGAAAAATGAGGCACATCGTAACCAAGAATCCATGAATTCAATGCAACAAGATCCGAGTTATATGAATTTTACTTTTGAAGTGGATGATACAGGCAAAGGAATTCCTAAAGAGAAGTACAAATCTATATTTGAGAATTATGTCCAAGTCAAAGAAACTGCTCTTGGTCAAGGAGGAACTGGCTTAGGACTTGGTATTGTGCAGTCCTTGGTACGTTTGATGCATGGAGATGTTGGAATAGTGGACAAGGATATTGGTGAAAAAGGGACATGCTTTAGGTTCAATGTGGTCCTTACTGCATGTGAGACAGGGACGGAAGGTAGCACAAGAGAAGGCCAATTTGTATCAGGTGACAGAACCATTCACACTAATAGTTCTACTTCAAGCACTTACTCCATGACTACTCCTAGGTTACTTAATCGCAGCCCTAGTCCTAGACCCGAGGCTTCTAGAGTTGTTCTTTTGATTCAAGGCGAGGAGCGCCAAAGGACTACACAAAGGTTCATGGAGAGTTTAGGGATCAAAGTTAAGGTTGTGATACATTTGGAAGATCTTTCTGACACTCTCATGAATATCAAACAAAAGGGGAAGGGGAACCATTCCAATAGCCAAAGTTGTTCTCCGTTTGCATCTCATAACTCTACTAGCAGAGCCGCCAGAGGAGTCTCTTCCAGTGCCATTGATGGAATTGACTATATAAATTCAATCTTCAAGAAGACAGATGTCGAAGCTACCCCTGGTTTTGTCCTTATTGTGATTGATGCAAATGCAGGACCATTTTCAGAACTTTCCAGAATGGTATCTGACTTCAGAAGTGGTCTCCGCAATCCTTGTAGGGTTGTTTGGTTAGAGGAGCCTCATATGCGTGGCGTTAATTTCGAAACCATTATTGATGAGGATGTTAGTAATTCAAATGATGTCCCGTTATATAAACCGTTTCATGGTAGTCGTTTATTCCAAGTTATTAGGTTTCTTCCCGAGTATGGTGGTGCATGGAAACACAGTTCTAGTGGAGCAAAGAGAGAAAGAGGAAATGAATTATGTGGAGAAATACAAGAATGTGGAGACTCAAGCAATAATGACAAACCCTTGAGTGGTATGAAATTTTTGGTTGTTGAGGACACTAGAGTTTTGCGCACGATAACTAGGACTATTTTAGAACGGCTTGGTGCTTCTATCGAGGAATGCGAGAATGGTGAACAAGCTCTACGGCTAGTTGAAGAGGGTCTAACTCGGGGTTTTCAAATTCCTCCATATGATTACATCTTAATGGACTGCGAGATGCCGGTAATGGATGGATACGAGGCAACAAGGCAGATAAGAGAGATGGAGAAGCCCTATGATGTTCATTTTCCTATCATTGCATTAACTGCTAATACAGAGGAATCGACAAAAATATCCATAGAAGCTGGAATGGACCATCACTTGGTCAAACCCATCATTAAAGAGGTGTTACTTGAAGCCATCAGAAGCATACATAGAAAAGAGTGA 3096 0.3999 MVLWPSSFVIVLAYIVLFILPPCWYVMVTRIEQHVNLNSKNVLSQFQSEIEHSATLIHPMNSSSTNFARFMSSTLKTTNISFSEIETKVAPLLFQAFETVPHLAQISYIGMDGHFFSYYTDHDQAMAMYSNASSSSNSTWGTLNTTVYYIQPVNRDTGELYGEAIKSNSSINASGVAEAINSSYGYASLGTKWNNGHDLLFISSARITRTGVISLGFPAKSITNFLTPIGHLGASLYLATKDGQVLVEGIHDTRMIISNDTVSFQSVNANDDQTSTVSCKGGVVASILNIRDVEYLIHCSPIDIMGIKSVYVLAIPQNALVRFVLNIKKIALALLTVMMVTTFIAIVCFLFINTRSARREMQSMNKSLALAKASHDIRAGLAVLTGLIDQMSYEEVVSGSELQTNLKQMDSCTKDLLGLLNNILDASKIEAGKMRLEEEEFDIFQLLEEVVDLYHPVAMKKGVDLVLDPCNGSLLRYSRVKGDRGKLKQVFSNLLSNAIKFTDEGYIAVRAWAQKSSIITTNRNSFRRHLSRLFYRKNEAHRNQESMNSMQQDPSYMNFTFEVDDTGKGIPKEKYKSIFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDVGIVDKDIGEKGTCFRFNVVLTACETGTEGSTREGQFVSGDRTIHTNSSTSSTYSMTTPRLLNRSPSPRPEASRVVLLIQGEERQRTTQRFMESLGIKVKVVIHLEDLSDTLMNIKQKGKGNHSNSQSCSPFASHNSTSRAARGVSSSAIDGIDYINSIFKKTDVEATPGFVLIVIDANAGPFSELSRMVSDFRSGLRNPCRVVWLEEPHMRGVNFETIIDEDVSNSNDVPLYKPFHGSRLFQVIRFLPEYGGAWKHSSSGAKRERGNELCGEIQECGDSSNNDKPLSGMKFLVVEDTRVLRTITRTILERLGASIEECENGEQALRLVEEGLTRGFQIPPYDYILMDCEMPVMDGYEATRQIREMEKPYDVHFPIIALTANTEESTKISIEAGMDHHLVKPIIKEVLLEAIRSIHRKE 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1060g00003 1031 CDD HisKA 366 428 IPR003661 GO:0000155|GO:0007165
Gabi1060g00003 1031 CDD REC_hyHK_CKI1_RcsC-like 904 1024 - -
Gabi1060g00003 1031 PANTHER TWO-COMPONENT HISTIDINE KINASE 41 1025 - -
Gabi1060g00003 1031 SMART HKATPase_4 482 635 IPR003594 -
Gabi1060g00003 1031 MobiDBLite consensus disorder prediction 729 750 - -
Gabi1060g00003 1031 Pfam Response regulator receiver domain 905 1025 IPR001789 GO:0000160
Gabi1060g00003 1031 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 634 IPR003594 -
Gabi1060g00003 1031 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 434 IPR036097 GO:0000155|GO:0007165
Gabi1060g00003 1031 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 631 IPR036890 -
Gabi1060g00003 1031 PRINTS Bacterial sensor protein C-terminal signature 593 611 IPR004358 GO:0016310|GO:0016772
Gabi1060g00003 1031 PRINTS Bacterial sensor protein C-terminal signature 577 587 IPR004358 GO:0016310|GO:0016772
Gabi1060g00003 1031 PRINTS Bacterial sensor protein C-terminal signature 559 573 IPR004358 GO:0016310|GO:0016772
Gabi1060g00003 1031 Gene3D - 433 639 IPR036890 -
Gabi1060g00003 1031 SMART REC_2 902 1024 IPR001789 GO:0000160
Gabi1060g00003 1031 Gene3D - 885 1031 - -
Gabi1060g00003 1031 ProSiteProfiles Response regulatory domain profile. 903 1028 IPR001789 GO:0000160
Gabi1060g00003 1031 SUPERFAMILY CheY-like 900 1029 IPR011006 -
Gabi1060g00003 1031 MobiDBLite consensus disorder prediction 653 676 - -
Gabi1060g00003 1031 MobiDBLite consensus disorder prediction 653 681 - -
Gabi1060g00003 1031 ProSiteProfiles Histidine kinase domain profile. 372 635 IPR005467 -
Gabi1060g00003 1031 Gene3D - 352 432 - -
Gabi1060g00003 1031 SMART HisKA_10 365 432 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1060g00003 Gabi-Chr1060 20652 26932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1060g00003 5 1030 Histidine Kinase Gene Family AT2G47430 37.456 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1060g00003 HATPase_c 7.3e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1060g00003 - - gmx:100790376 1174.46