Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1057g00015 ATGCAGCAAACTGATCAAACGGTCCTGAGCTTGAGGCCTGGCGGTGGTCGTGGCGGCGGAAGTAGGCTTTTCGGTCTCTCTTCAATCTCATCATCTTCTCCTTTTTCCGCTGATCTTCCTCTCTTGCGTCCTCATGGCGTTGCTCCTTCCTCTTTCTTTCTCAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTGCAATATACCAGAGATCAGATTTTACAGCTTAGAGAGGTAACTGCTGTTGAGGTTCCCGATGATATTATAAAGATCCAACAAGATATAGAAGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGCCATGTTGAAAACAATCCTCCTCGACAATTACAAAATCGATATTCTGAACCAGATAGCCGTGACTGGCATGGTCGCTCTGGACAACTTCCTGCTAATCCTGATGAGAGGTCTTGGGAAAATCTCAGAGATAACAGGGAGTTTGGTAATAGATTTGATTCTAGACAGCAGGATGCTAGTCAGGTTAATCGCCAAGACCAACTTAATTCCCAGTTTGCAAGGACACAAGGGGGAGGACCTACTCCTACTCTAGTCAAGGCTGAGGTCCCATGGTCAGCTAGAAGGGGAAGTCTCTCTGAAAAAGATCGTGTCTTGAAGACTGTGAAAGGAATATTAAATAAGTTAACTCCTGAGAAGTTTGATCTCTTGAAGGGTCAGTTAATCGATTCTGGCATTACGTCATCTGACATCTTGAAGGGTGTCATTTCACTTGTATTTGATAAGGCTGTTCTAGAACCTACATTTTGCCCCATGTATGCTCAGTTGTGTTCAGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGTACCTGGTGGGAAAGATATCACTTTTAAGAGAGTACTCCTGAATATCTGCCAGGAGGCTTTTGAAGGTGCTTATAATCTGAGGGAAGAAGTAAAAAAGCTGACTGCCCCTGAGCAGGAGATGGAGCGTAGGGACAAGGAAAAACTGATCAAGCTTCGTACCCTTGGAAATATACGTTTAATTGGTGAACTATTGAAGCAGAAGATGGTTCATGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACAACCAGAGAGCAATTCTTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCATTTTTTCAATACCATTGGCAAGCAGCTTGATGAAAGCCCTAAATCACGGCGTATAAATGATATGTACTTTAGTCGATTGAAAGAACTGAGTACAAATCCTCAACTGGCACCGCGCCTTAGGTTCATGATTCGGAATGTTTTAGATTTGCGTGCTAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCCAAGACCATCACAGAAATTCATTCAGAGGCAGAAAAGAATCTTGGATTGCGTCCAGGTGCCACTGCTAGTATGAGAAATATCCGTGGCGGTGTTCAAGGAAATGCCAGCCTGGGGGGCTTCCCCATTGGTCGTCCTGGTGCGGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGATTATGATGCCTGAAATGCCTGGAATTGATAACGACAACTGGGAGATGCCTAAGACTAAATCTATGCCAAGAGGAGACTTGTCAGGTATTCAAGCTGCAAGACGCAGCAACTCTTCTTTACATTCCAAATCCACAACCCTGAACTCAAAGTTGCTACCTCAAGGAAGTGGCGGTATTATAAGTGGAAGTAGTGCCCTAGTGCATGGAGGTGGTATCCTTTCTGCTCGCCCATCAAACTTTGGTTTAGGTACTGGGGCTGCATCTAAATCCCCTTCACCTCCTAAAACAGTCTCTGCTGTCTCCTCGGAGAAGCCACAGGCTCCAGCTGCTATATTGAATTCTGACAATCTTATTCTTCGCCGCAAAACTGTCGCTCTTCTGGAAGAATATTTCAATGTTCGGCTTTTGGATGAGGCATTGCGGTGCGTGGAGGAACTAAAATCTCCATCTTACCACCCTGAGGTAGTTAAGGAAGCCATTTCCCTTGGACTTGATAAAAGTCCACCATGCGTTGAACCCGTTGCCAGTCTTCTTGAGTATCTGTTTGTGAATAAGATCCTTACAGCTAGAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTGCTGGATGACATTGGCATAGATTTACCTAAAGCGCCCAATAATTTTGGTGAGATAATTGGGAAACTAATTTTGGCAGGGGGATTGGATTTTAAGGTGGTGAACGAGATCCTGAAGAAGGTGGAAGATGACCTGTTCCCGAAAGAGATATTTGAAACTGCAGTACGGGTAATTACATCTGCATCTGGGCAAGCTGTGTTGGATGCACAAACAACTGACATTGAGGCTTGCCAGAGTCTGCTCAAGTGA 2370 0.4489 MQQTDQTVLSLRPGGGRGGGSRLFGLSSISSSSPFSADLPLLRPHGVAPSSFFLKAGDSRFEGRERVQYTRDQILQLREVTAVEVPDDIIKIQQDIEAELFGEDQSWGHVENNPPRQLQNRYSEPDSRDWHGRSGQLPANPDERSWENLRDNREFGNRFDSRQQDASQVNRQDQLNSQFARTQGGGPTPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSSDILKGVISLVFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEVPGGKDITFKRVLLNICQEAFEGAYNLREEVKKLTAPEQEMERRDKEKLIKLRTLGNIRLIGELLKQKMVHEKIVHHIVQELLGQPESNSCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLAPRLRFMIRNVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNIRGGVQGNASLGGFPIGRPGAGGLMPGMPGTRIMMPEMPGIDNDNWEMPKTKSMPRGDLSGIQAARRSNSSLHSKSTTLNSKLLPQGSGGIISGSSALVHGGGILSARPSNFGLGTGAASKSPSPPKTVSAVSSEKPQAPAAILNSDNLILRRKTVALLEEYFNVRLLDEALRCVEELKSPSYHPEVVKEAISLGLDKSPPCVEPVASLLEYLFVNKILTARDIGTGCLLFGSLLDDIGIDLPKAPNNFGEIIGKLILAGGLDFKVVNEILKKVEDDLFPKEIFETAVRVITSASGQAVLDAQTTDIEACQSLLK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1057g00015 789 ProSiteProfiles MI domain profile. 624 746 IPR003891 -
Gabi1057g00015 789 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 60 783 IPR045208 GO:0003743
Gabi1057g00015 789 SMART if4_15 212 438 IPR003890 GO:0003723|GO:0005515
Gabi1057g00015 789 MobiDBLite consensus disorder prediction 103 147 - -
Gabi1057g00015 789 Pfam MA3 domain 625 737 IPR003891 -
Gabi1057g00015 789 SMART ma3_7 625 737 IPR003891 -
Gabi1057g00015 789 FunFam Eukaryotic translation initiation factor isoform 4G-2 203 439 - -
Gabi1057g00015 789 Gene3D - 203 439 - -
Gabi1057g00015 789 SUPERFAMILY ARM repeat 206 441 IPR016024 -
Gabi1057g00015 789 Pfam MIF4G domain 212 438 IPR003890 GO:0003723|GO:0005515
Gabi1057g00015 789 MobiDBLite consensus disorder prediction 589 608 - -
Gabi1057g00015 789 SUPERFAMILY ARM repeat 625 766 IPR016024 -
Gabi1057g00015 789 Gene3D - 623 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1057g00015 Gabi-Chr1057 181955 188450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1057g00015 1 787 Eukaryotic Initiation Factors Gene Family AT5G57870 63.930 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1057g00015 K03260 - gmx:100800438 1160.59