Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1057g00006 ATGATCATATATATAAAGGGTGCAATGATGGCATTCCAAACCAAGTTGCATATATTATTATTGTGCTTTATAATCTTTTCATTTTCATGCATTGTTGCTGTGCCAAAGGAACAAGAGTTAGATCGAATCTCTTCTCTGCCGGGGCAGCCATCATCAGTGACATTTTCTCAATTCTCTGGTTATGTCACTGTCAACGAGCAACATGGCAGAGCACTCTTCTACTGGTTCACTGAAGCCACCACTTCCCCAGATAATAAACCTCTTGTTCTCTGGCTCAATGGAGGACCAGGTTGCTCATCAGTGGCATACGGGGCATCAGAGGAAATTGGGCCATTCCGAGTAAACAAAACTGGCTCTTCTCTATACCTTAATAAATATGCATGGAATACAGAAGCAAATATACTTTTTCTTGAATCACCCGCTGGTGTTGGTTTCTCATACACAAATACCAGTTCTGACCTCAAAAATTCTGGGGACAAAAGGACAGCTCAGGATGCTCTAGTTTTTCTAATTAGATGGATGGCGAGATTTCCACAATATAAATATAGAGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAATCCATGATTATAATAAAGAAAATCCTCATATCCTTAATCTTAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAACTACTATGATGGGGTTGGAACTGTCACGTATTGGTGGAGCCACTCTATGATATCTGATCAATCATACAAATCTATCCTCAAATACTGTAATTTCACTGAAGAAAAAACATCTAAAAAATGTGATGATGCTGTGAGTTATGCAGTTAACCATGAATTTGGAAACATTGATCAGTACAATATCTATACCCCTAAGTGCATAACATCACACAACAATACCATAAGGTACATGAGGCACAAGAGTACAATTTTACATAGAATTTCTGGGTATGATCCGTGTACTGAAGACTATGCAGAGAAATATTATAATCGTCGTGATGTTCAGAAAGCAATGCATGCAAATGTTACAAACATTCCTTACAAATGGACTGCTTGCAGTGACGTGCTCAATAATCATTGGAAGGATTCTGAAGTTTCTATATTGCCTATATACAAAGAATTAATTGCAGCGGGTTTGAGAATATGGGTTTTCAGCGGAGACACAGATTCAGTGGTTCCAGTAACTGCCACTAGGTTTTCTCTCAACCATCTCAACCTCCCCATTAAAACTCGTTGGTATCCATGGTACTCAGGTCAACAGGTAGGTGGATGGACAGAGGTGTATAAGGGACTAACTTTTGCAACGGTGAGAGGAGCTGGGCATGAAGTACCACTGTTTCAGCCACAGCGAGCTTACATACTTTTCAGGGCATTTTTGGCAGGGAAAGAGCTACCAAAATCTTGA 1407 0.4001 MIIYIKGAMMAFQTKLHILLLCFIIFSFSCIVAVPKEQELDRISSLPGQPSSVTFSQFSGYVTVNEQHGRALFYWFTEATTSPDNKPLVLWLNGGPGCSSVAYGASEEIGPFRVNKTGSSLYLNKYAWNTEANILFLESPAGVGFSYTNTSSDLKNSGDKRTAQDALVFLIRWMARFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKENPHILNLKGFIVGNAVTDNYYDGVGTVTYWWSHSMISDQSYKSILKYCNFTEEKTSKKCDDAVSYAVNHEFGNIDQYNIYTPKCITSHNNTIRYMRHKSTILHRISGYDPCTEDYAEKYYNRRDVQKAMHANVTNIPYKWTACSDVLNNHWKDSEVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLPIKTRWYPWYSGQQVGGWTEVYKGLTFATVRGAGHEVPLFQPQRAYILFRAFLAGKELPKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1057g00006 468 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Gabi1057g00006 468 Gene3D - 321 359 - -
Gabi1057g00006 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 449 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 Gene3D - 368 462 - -
Gabi1057g00006 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Gabi1057g00006 468 SUPERFAMILY alpha/beta-Hydrolases 41 465 IPR029058 -
Gabi1057g00006 468 Gene3D alpha/beta hydrolase 37 296 IPR029058 -
Gabi1057g00006 468 FunFam Carboxypeptidase 368 462 - -
Gabi1057g00006 468 Pfam Serine carboxypeptidase 47 461 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 FunFam Carboxypeptidase 37 296 - -
Gabi1057g00006 468 FunFam Carboxypeptidase 317 465 - -
Gabi1057g00006 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Gabi1057g00006 468 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1057g00006 Gabi-Chr1057 88932 95687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1057g00006 326 465 Calmodulin-binding Proteins AT2G22960 31.915 3.34e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1057g00006 K16297 - gmx:100785391 826.624