Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1057g00005 ATGATCATATATATAAAGGGTGCAATGATGGCATTCCAAACCAAGTTGCATATATTATTATTGTGCTTTATAATCTTTTCATTTTCATGCATTGTTGCTGTGCCAAAGGAACAAGAGTTAGATCGAATCTCTTCTCTGCCGGGGCAGCCATCATCAGTGACATTTTCTCAATTCTCTGGTTATGTCACTGTCAACGAGCAACATGGCAGAGCACTCTTCTACTGGTTCACTGAAGCCACCACTTCCCCAGATAATAAACCTCTTGTTCTCTGGCTCAATGGAGGACCAGGTTGCTCATCAGTGGCATACGGGGCATCAGAGGAAATTGGGCCATTCCGAGTAAACAAAACTGGCTCTTCTCTATACCTTAATAAATATGCATGGAATACAGAAGCAAATATACTTTTTCTTGAATCACCCGCTGGTGTTGGTTTCTCATACACAAATACCAGTTCTGACCTCAAAAATTCTGGGGACAAAAGGACAGCAGCTCAGGATGCTCTAGTTTTTCTAATTAGATGGATGGCGAGATTTCCACAATATAAATATAGAGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAATCCATGATTATAATAAAGAAAATCCTCATATCCTTAATCTTAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAACTACTATGATGGGGTTGGAACTGTCACGTATTGGTGGAGCCACTCTATGATATCTGATCAATCATACAAATCTATCCTCAAATACTGTAATTTCACTGAAGAAAAAACATCTAAAAAATGTGATGATGCTGTGAGTTATGCAGTTAACCATGAATTTGGAAACATTGATCAGTACAATATCTATACCCCTAAGTGCATAACATCACACAACAATACCATAAGGTACATGAGGCACAAGAGTACAATTTTACATAGAATTTCTGGGTATGATCCGTGTACTGAAGACTATGCAGAGAAATATTATAATCGTCGTGATGTTCAGAAAGCAATGCATGCAAATGTTACAAACATTCCTTACAAATGGACTGCTTGCAGTGACGTGCTCAATAATCATTGGAAGGATTCTGAAGTTTCTATATTGCCTATATACAAAGAATTAATTGCAGCGGGTTTGAGAATATGGGTTTTCAGCGGAGACACAGATTCAGTGGTTCCAGTAACTGCCACTAGGTTTTCTCTCAACCATCTCAACCTCCCCATTAAAACTCGTTGGTATCCATGGTACTCAGGTCAACAGGTAGGTGGATGGACAGAGGTGTATAAGGGACTAACTTTTGCAACGGTGAGAGGAGCTGGGCATGAAGTACCACTGTTTCAGCCACAGCGAGCTTACATACTTTTCAGGGCATTTTTGGCAGGGAAAGAGCTACCAAAATCTTGA 1410 0.4007 MIIYIKGAMMAFQTKLHILLLCFIIFSFSCIVAVPKEQELDRISSLPGQPSSVTFSQFSGYVTVNEQHGRALFYWFTEATTSPDNKPLVLWLNGGPGCSSVAYGASEEIGPFRVNKTGSSLYLNKYAWNTEANILFLESPAGVGFSYTNTSSDLKNSGDKRTAAQDALVFLIRWMARFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKENPHILNLKGFIVGNAVTDNYYDGVGTVTYWWSHSMISDQSYKSILKYCNFTEEKTSKKCDDAVSYAVNHEFGNIDQYNIYTPKCITSHNNTIRYMRHKSTILHRISGYDPCTEDYAEKYYNRRDVQKAMHANVTNIPYKWTACSDVLNNHWKDSEVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLPIKTRWYPWYSGQQVGGWTEVYKGLTFATVRGAGHEVPLFQPQRAYILFRAFLAGKELPKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1057g00005 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 Pfam Serine carboxypeptidase 47 462 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 Gene3D alpha/beta hydrolase 37 297 IPR029058 -
Gabi1057g00005 469 Gene3D - 322 360 - -
Gabi1057g00005 469 FunFam Carboxypeptidase 369 463 - -
Gabi1057g00005 469 Gene3D - 369 463 - -
Gabi1057g00005 469 FunFam Carboxypeptidase 318 466 - -
Gabi1057g00005 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Gabi1057g00005 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 450 IPR001563 GO:0004185|GO:0006508
Gabi1057g00005 469 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Gabi1057g00005 469 FunFam Carboxypeptidase 37 297 - -
Gabi1057g00005 469 SUPERFAMILY alpha/beta-Hydrolases 41 466 IPR029058 -
Gabi1057g00005 469 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1057g00005 Gabi-Chr1057 88932 95687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1057g00005 327 466 Calmodulin-binding Proteins AT2G22960 31.915 3.48e-17 77.8