Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1055g00016 ATGGAAATTGGGAGAGAGGATGAGATTGTGGACATGTCAATGTCACCCCCATCAATAGGTTCCATGAAGATAGCAGGTAGCAATGACTTTGGTCACAAGAAAGAGTTCATTTCTCAAGCATACCTTCCAAATAGGAACTCAGAGATTGACATACAAGTTGAAGGTTCCAGTATCAACCAAAATGGCCCCCTCCCCATATTTCTAAAGTTTGAAGATGTAGAGTATAAGATAAGAAATAGCCAAGCAGCTTCTAATAACCCTGTGAAGACAATGGTGTCAAAGGTAGCCACACAACTCACCATGGATGATGATAGATATAAGAAAATTTTGAAGGGCATCACAGGAAGCGTTGGCCCTGGTGAAATGCTTGCTCTGATGGGTCCTTCTGGTAGTGGCAAGACAACATTGTTGAGAGTTATAGGAGGAAGATTACTTGACAATGTAAAGGGGAAAATAACTTATAATGATGTTCAATATACTCCGGCTGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTGCTTTTCCCACAATTAACTGTAGAAGAAACATTGGTCTTCTCTGCATTCTTAAGGCTTCCAACTAATATGAGCAAGCAGCAAAAATATGCAAAAGTGGAGAGCACTGTCAAGGAGCTAGGCCTTGAAAGATGTCGCAACACAAAAATAGGTGGAGGATATCTCAAAGGCATATCAGGAGGAGAAAGGAAAAGAACCAGCATAGGCTATGAAATTCTTGTTGATCCTTCACTTCTGCTACTTGATGAACCAACTTCAGGCCTTGATTCCACCTCAGCAAACAAACTCCTCCTCACCCTTCAGGGACTTGCTAAGGCTGGAAGGACCATAATCACAACAATACACCAGCCATCCAGCAGAATCTTTCGCATGTTTGACAAACTTCTGATGATATCAGGAGGCTATCCTGTTTACTATGGGAAGGCTAGAGAATCAATGGAGTACTTCTCATCCTTGAGGTTCATCCCAGAAATACCAATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAATTGAATGACATTAGTGTTCCAACAGATATTTTGGAAGATCAAGAAAATTCTGACCCTTCAAAAGCTGTTATCAAATATCTACAACTCAAATACAAAGCTTTACTGGAGCCGAATGAAAAAGAGAACCATAGAGTAGCAAACACACCAGAACATCTTCAACTAGCCATTCAGGTTAAGAAGGAGTGGACATTGAGTTGGTTTGACCAATTCGTGATTCTTTCTAGGAGGACATTCAGAGCAAGAAGCAAGGACTATTTTGATAAGTTAAGACTAGTTCAAGCAATTGGTGTTGCACTTTTGTTGGGTCTCCTTTGGTGGAAATCCTCAACCAACACAGAGGCTCAACTCAGAGATCAGGTTGGTCTAACATTCTACATATGTATATTTTGGACATCTTCATGCATTTTTGGAGCAGTCTATGTCTTTCCATTCGAAAAGTTCTACTTGATAAAAGAAAGGAAAGCTGACATGTATAGATTAAGTGTATACTATGCATGCAGCACACTGTGTGACATGGTGGCACATGTTTTCTATCCTACTATTTTCATGGTTATCTTGTACTTCATGGCTGGCTTCAAGAGAACTGTCGCTTGCTTCTTCCTGACATTATTTACTGTTCTATTAATAGCTATAACAAGTCAAGGGGCAGGAGAACTGTTTGGAGCGACAGTTATGAGTATCAAAAGAGCAGGGATGGCTGCTTCTTTGATTCTAATGTTATTCCTTCTTACAGGTGGCTATTATGTCCAGCACATACCAAAGTTCATGCGGTGGTTGAAGTATTTGTCGTTCATGTACTATGGGTTCAGGCTTCTTCTAAAAGTGCAGTATTCAGGAGACCAACTATATGATTGTGAAAGCGAGGGAGGTTGCAGGACCCTGCAGAGTTCACCTGCATTTGACACTGTAAACCTGAAAGGTGGCTTAAAAGAAGTATGGGTTCTGCTAGCCATGGCTCTATGCTTCCGGTTGTTAGCATACTTATGCCTCCGTAGAAGAATTGACGTATGCAATTAA 2058 0.4101 MEIGREDEIVDMSMSPPSIGSMKIAGSNDFGHKKEFISQAYLPNRNSEIDIQVEGSSINQNGPLPIFLKFEDVEYKIRNSQAASNNPVKTMVSKVATQLTMDDDRYKKILKGITGSVGPGEMLALMGPSGSGKTTLLRVIGGRLLDNVKGKITYNDVQYTPAVKRRIGFVTQEDVLFPQLTVEETLVFSAFLRLPTNMSKQQKYAKVESTVKELGLERCRNTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKAGRTIITTIHQPSSRIFRMFDKLLMISGGYPVYYGKARESMEYFSSLRFIPEIPMNPAEFLLDLATGQLNDISVPTDILEDQENSDPSKAVIKYLQLKYKALLEPNEKENHRVANTPEHLQLAIQVKKEWTLSWFDQFVILSRRTFRARSKDYFDKLRLVQAIGVALLLGLLWWKSSTNTEAQLRDQVGLTFYICIFWTSSCIFGAVYVFPFEKFYLIKERKADMYRLSVYYACSTLCDMVAHVFYPTIFMVILYFMAGFKRTVACFFLTLFTVLLIAITSQGAGELFGATVMSIKRAGMAASLILMLFLLTGGYYVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCESEGGCRTLQSSPAFDTVNLKGGLKEVWVLLAMALCFRLLAYLCLRRRIDVCN 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1055g00016 685 SMART AAA_5 119 310 IPR003593 GO:0016887
Gabi1055g00016 685 Pfam ABC transporter 110 260 IPR003439 GO:0005524
Gabi1055g00016 685 Gene3D - 94 327 IPR027417 -
Gabi1055g00016 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 55 674 - -
Gabi1055g00016 685 FunFam ABC transporter G family member 22 97 326 - -
Gabi1055g00016 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 332 IPR003439 GO:0005524
Gabi1055g00016 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 325 IPR027417 -
Gabi1055g00016 685 Pfam ABC-2 type transporter 416 624 IPR013525 GO:0016020|GO:0140359
Gabi1055g00016 685 Pfam ABC-2 type transporter 289 348 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1055g00016 Gabi-Chr1055 191314 194536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1055g00016 108 293 Calmodulin-binding Proteins AT2G36910 32.461 5.52e-13 70.9