Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1054g00001 ATGTATTCCAATAAAAAGAGCAAGGAGGATGGCATAGCTGAGCATCGTTACATGGAAACCGACCCAACTGGTCGATATGGTCGGGTTGGAGATATTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGAGATCCTTGGAATAGAGGTAGCATGGAACCAGGTCAAACTCAATGAAGCACTTAGAACACCAGACGACTTGGAGCGGCTTTATTTAGAGGTTCATCTCCTCAGTACCCTCAAGCACCAATCCATCATACGATTCTATACCTCTTGGATTGATGTTGACAACAAGACCTTCAACTTCATTACAGAATTGTTCACTTCAGGGACACTCAGAGAATACAGGAAGAAATATACGCACATTGGCATACAAGCAATAAAGAGTTGGGCTCGCCAAATCTTACAGGGTCTTGTTTATCTACATGAGCATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTATCAATGGCCATCTTGGACAAGTGAAAATTGGTGATCTTGGTCTAGCAGCAATTCTCCGCGGTTCCCAGCCAGCCCATAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGACTATCCATATAGTGAATGTGCAAACCCTGCACAGATATACAAGAAAGTGACATCGGGGAAGCTACCAGCAGCACTTTTCCAAATTGAAGACAAAGAAGCACAGAAGTTTATTGCCAAATGCCTAGTAGCTGCAGCAAACAGACCTTCAGCAAAAGCATTGTTGCAAGATCCATTTCTTGTGTCTGATGATGCATCATCCATGACAAAGATTGGAATTCAGAAGCCATTTTTAAATTACAGTGAGATGGAAAAACTTCAATTGAGTGATGATTTACCTAGGACTGCAATGTCAATAACTGGGAAGCTGAATCCGGAAGATGATACGATCTTTCTCAAAGTGCAAATTGCTGACAAGAATGGTCCTGGTAGGAATATATATTTTCCCTTTGACATTCTCACTGACACCCCCATTGATGTTGCAATGGAGATGGTAAAAGAATTGGAGATCACAGATTGGGAGCCTTTTGAAATTGCAAATATGATTGAAGGGGAGATATCTGTGCTGCTACCAAATAGGAGAAATAGTAACTGTTCAGACACCTGCCATACATTTAGTTATCAAGATAATGATGATGATGAAGGTCCTCATCATCATTTCCACTCTATCTCTTCTTGTTCATCTTCTCAAGAATCAATATCAGGTTTAATCAGTAGAGCTGATGACATATCAAATGAACATTATTGGCTCCAGGATGATGTGCTTGATGATGGCAGTTCAAGATGCTCTTCACAGGGGACATATTCCAACTTGAATTTTTGTTCTATGGATGACCATGACTATAATGTGGCTTCTACAAGAAAAGATAAGTATCCTATCATAAAGAGTCACAAGTGTTCAAGGTTTTCCCCTGGTGAAGACTTGGTCACTTTGAACCAGTTCAAAGTTTTAGCTGGACCACAAGCACCTTCTACTAGTAAAAGGATGATAGACAATCGTAGACTAACAAGGAACAAGTCACTAATTGATATGAGGAGCCAATTACTACACCGATCACTAGTTGAGGAGGTAAACAGAAGAAGATTATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTCAGACACCTTGTGATGTTACCAGCAAAAAGTCACAGCCAGGATGTGGTGCTTTAGATGTGAACACATCAAGAAGTGGCAAGGGAGAAAACTTTAGAGATAAAAAAAATTAA 1848 0.401 MYSNKKSKEDGIAEHRYMETDPTGRYGRVGDILGKGAMKTVYKAIDEILGIEVAWNQVKLNEALRTPDDLERLYLEVHLLSTLKHQSIIRFYTSWIDVDNKTFNFITELFTSGTLREYRKKYTHIGIQAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTSGKLPAALFQIEDKEAQKFIAKCLVAAANRPSAKALLQDPFLVSDDASSMTKIGIQKPFLNYSEMEKLQLSDDLPRTAMSITGKLNPEDDTIFLKVQIADKNGPGRNIYFPFDILTDTPIDVAMEMVKELEITDWEPFEIANMIEGEISVLLPNRRNSNCSDTCHTFSYQDNDDDEGPHHHFHSISSCSSSQESISGLISRADDISNEHYWLQDDVLDDGSSRCSSQGTYSNLNFCSMDDHDYNVASTRKDKYPIIKSHKCSRFSPGEDLVTLNQFKVLAGPQAPSTSKRMIDNRRLTRNKSLIDMRSQLLHRSLVEEVNRRRLFKTVGAVENIGFQTPCDVTSKKSQPGCGALDVNTSRSGKGENFRDKKN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1054g00001 615 MobiDBLite consensus disorder prediction 589 604 - -
Gabi1054g00001 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gabi1054g00001 615 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
Gabi1054g00001 615 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 478 - -
Gabi1054g00001 615 SUPERFAMILY Protein kinase-like (PK-like) 28 317 IPR011009 -
Gabi1054g00001 615 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1054g00001 615 CDD STKc_WNK 25 285 - -
Gabi1054g00001 615 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1054g00001 615 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Gabi1054g00001 615 MobiDBLite consensus disorder prediction 589 615 - -
Gabi1054g00001 615 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Gabi1054g00001 615 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Gabi1054g00001 615 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1054g00001 Gabi-Chr1054 7662 12896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1054g00001 17 588 MAP Kinase Kinase Kinase AT5G58350 59.483 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi1054g00001 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1054g00001 K08867 - gmx:100778102 974.156