Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00013 ATGGATTCTTCCTCTTTGAGAAAGCCAAACGTACGAAAAGGAAAGGTTGAGGTCAAGAAAGTGGAAGAAAAAAGCAAGCGTTGTGTGACCTTCTCAAAACGCAAACAAGGGCTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAACTGAAACTGCTTTGATCATCAATTCTCAGAAAGGAAAGCTCTATGCCTGCGGCTATCCTGATCCTGACTCTGTCATCCACCGCTACCACGACCGCAGCGGAAGAGGAGGGTATCACAACCGTGCTGCTAAAAGGAGGTTCCAAGAGAGTGTTGAAACCTTAAGGCTAAAATATGAGGCAACTGAATCTAAGTTGAAAGAAGAGAATATGCATCATGAAAAGATCACTGAGGCAAAAAAGAATAGTTTACTATTCACTGAATGGTGGGATCTCTCCATTGAGGATATGAGTTTTGAACAAAGTTGA 456 0.4232 MDSSSLRKPNVRKGKVEVKKVEEKSKRCVTFSKRKQGLFNKVTELSLLCQTETALIINSQKGKLYACGYPDPDSVIHRYHDRSGRGGYHNRAAKRRFQESVETLRLKYEATESKLKEENMHHEKITEAKKNSLLFTEWWDLSIEDMSFEQS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00013 151 Gene3D - 23 110 IPR036879 GO:0003677|GO:0046983
Gabi1053g00013 151 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gabi1053g00013 151 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gabi1053g00013 151 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gabi1053g00013 151 PANTHER MADS BOX PROTEIN 13 139 - -
Gabi1053g00013 151 Coils Coil 94 114 - -
Gabi1053g00013 151 SUPERFAMILY SRF-like 12 87 IPR036879 GO:0003677|GO:0046983
Gabi1053g00013 151 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Gabi1053g00013 151 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Gabi1053g00013 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00013 Gabi-Chr1053 108097 108552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00013 6 151 MADS-box Gene Family AT5G51870 32.192 6.85e-17 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00013 SRF-TF 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00013 - - gmx:100817750 146.362