Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00012 ATGTGTGACCTTCTAAAACGCAAACAAGGGTTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAGCTGAAACTGCTTTGATCATCAATTCTCAGAAAGGAAAGCTCTATGCATGCGGCTATCCTGATCCGGACTCTGTCATCCACCGCTACCACGGCGGCAGCGGAGGAGGAGGGTATCACAACCATGCTGCTAAAAGGAGGTTCCAAGAGGGTGTTGAAACCTTAAGGCTAAAATACAAGGCAACTGAATCTAAGTTGAAAAAAGAGAATATGCATCAAGAAGAGATCACTGAGGCAAAAAAGAATGGTTTGCTATTCAATGAATGGTGGGGTCTCTCCATTGAGGATATGAGATTTGAACAAGTTGAGGAATTTAAGAATTGCATAGAAGATTTGAAGATGAAACTTGTTGCTGCAAGGGAAAAGAAGAAGAAGAAGGTTGATAATTCACTTCCACCATTACCAATTACATCATCACCGATGCAAAGTTTATCCGATATTTCATTCTTGAATGAGGGTTTCAATGGGTGTGGTGCATGGAACTGTGGTGATTTTAGCCATTATTAA 573 0.4101 MCDLLKRKQGFFNKVTELSLLCQAETALIINSQKGKLYACGYPDPDSVIHRYHGGSGGGGYHNHAAKRRFQEGVETLRLKYKATESKLKKENMHQEEITEAKKNGLLFNEWWGLSIEDMRFEQVEEFKNCIEDLKMKLVAAREKKKKKVDNSLPPLPITSSPMQSLSDISFLNEGFNGCGAWNCGDFSHY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00012 190 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Gabi1053g00012 190 SUPERFAMILY SRF-like 5 58 IPR036879 GO:0003677|GO:0046983
Gabi1053g00012 190 Gene3D - 4 75 IPR036879 GO:0003677|GO:0046983
Gabi1053g00012 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 39 IPR002100 GO:0003677|GO:0046983
Gabi1053g00012 190 Coils Coil 124 151 - -
Gabi1053g00012 190 PANTHER MADS BOX PROTEIN 5 142 - -
Gabi1053g00012 190 SMART madsneu2 4 43 IPR002100 GO:0003677|GO:0046983
Gabi1053g00012 190 PRINTS MADS domain signature 6 21 IPR002100 GO:0003677|GO:0046983
Gabi1053g00012 190 PRINTS MADS domain signature 21 42 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00012 Gabi-Chr1053 106966 107538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00012 6 135 Type I MADS-box Gene Family AT5G60440 30.827 6.06e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00012 SRF-TF 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00012 - - gmx:100817750 143.28