Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00008 ATGTCTCAGATTTATAATGTTGTACTTAAAGAGCCAAACATACGAAAGGGTAAGGTTGAGATCAAGAAAGTGGAAGAAAAAAGAAAGCGCTACGTGACCTTCTCGAAACACAAACAAGGGCTTTTCATAAAAGTCACTGAGTTATCCCTTCTTTGCCAAGCTGAAACCGCTTTGGTTATCAATTCTCAGAAAGGAAAGCTTTATGCCTGCGGCTACCCCGATCCAGACTCTGTCATGCACCGCTACCAAGGCGGCGACGGAGGAGGGTATCACAACCGTGCTGCTAAAACGAGGTTCCAACAGGGTGTTGAAACCCTAAGGCTGAAATTTGATGCAACTGAAGAAAAGTTGAAAGAAGAGAATATGCATCATGAAAAGATCACTGAGGGAAAAAAGAATGGTTTGGTATTCACTGAATGGCGGGATCTCTCCATCGAGGATATGGGTTTTGAACAAGTTGAGGAATTCAAGAATTGCTTAGAAGATTTGAAGAAGAAACTTGTTGCTGCAAGGGAAAAGAAGAAGAAGAAGGTCAATAATTCACTTCCACCATTGCCAGTTGCACATTTACCATTACCAGTTGCATCATCACCGATGCAAAGGTTATCAGATGTGTCTTTCTTGAATGAGGGTTTCAAAGTGTATGGTGTATGGAACAGTGGCGTCAGTTCCATGGTTCCTGGTGGTGGTTTTCACCATTATTAA 705 0.4213 MSQIYNVVLKEPNIRKGKVEIKKVEEKRKRYVTFSKHKQGLFIKVTELSLLCQAETALVINSQKGKLYACGYPDPDSVMHRYQGGDGGGYHNRAAKTRFQQGVETLRLKFDATEEKLKEENMHHEKITEGKKNGLVFTEWRDLSIEDMGFEQVEEFKNCLEDLKKKLVAAREKKKKKVNNSLPPLPVAHLPLPVASSPMQRLSDVSFLNEGFKVYGVWNSGVSSMVPGGGFHHY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00008 234 Gene3D - 26 107 IPR036879 GO:0003677|GO:0046983
Gabi1053g00008 234 PANTHER MADS BOX PROTEIN 16 167 - -
Gabi1053g00008 234 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Gabi1053g00008 234 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Gabi1053g00008 234 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Gabi1053g00008 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Gabi1053g00008 234 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Gabi1053g00008 234 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Gabi1053g00008 234 Coils Coil 153 180 - -
Gabi1053g00008 234 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00008 Gabi-Chr1053 57629 58495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00008 16 165 Type I MADS-box Gene Family AT5G60440 29.870 1.46e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00008 SRF-TF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00008 - - gmx:100818284 142.51