Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00006 ATGGATTCTTCCTCTATAAGAAAGTCAAACATACGAAAGGGGAAGGTTGCGATTAAGAAAGTGGAAGAAAAAAGCAAGCGCTACGTGACCTTCTCGAAATGCAAACAAGGGCTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAGCTGAAACCGCTTTGGTCATCAATTCTCAAAAAGGAAAGCTCTATGCATGCAGCTACTCGATCCGGACACTATCATCCACCGTTACGAAGGCGGCAGCGGAGGAGGGTATCACAACCGTGCTGCTAAAGGAGGTTCCAACAGGGTATTGA 300 0.46 MDSSSIRKSNIRKGKVAIKKVEEKSKRYVTFSKCKQGLFNKVTELSLLCQAETALVINSQKGKLYACSYSIRTLSSTVTKAAAEEGITTVLLKEVPTGY 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00006 99 ProSiteProfiles MADS-box domain profile. 11 65 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 66 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 SUPERFAMILY SRF-like 12 69 IPR036879 GO:0003677|GO:0046983
Gabi1053g00006 99 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 68 - -
Gabi1053g00006 99 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gabi1053g00006 99 Gene3D - 23 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00006 Gabi-Chr1053 34637 34936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00006 13 80 MADS-box Gene Family AT2G03710 48.529 1.84e-14 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00006 SRF-TF 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00006 - - gmx:121175156 90.8929