Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00005 ATGGATTCTTCCTCTGTAAGAAAGTCAAACATACGAAAGGGGAAGGTTGAGATCAAGAAAGTGGAAGAAAAAAGCAAGCGCTACGTGACCTTCTCGAAATGCAAACAAGGGCTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAGCTGAAACCGCTTTGGTCATCAATTCTCAAAAAGGAAAACTCTATGCATGCGGCTACCCCGATTCAGACTTTGTCATCCACTACTACCACGGCGGCGGAGGAGGGTATCACAACTGTGCTGCTAAAAAAGCTTCCAAGAAGGATCTCTCCATTGAGGATATTAGTTTTGAACAAGTTGAGAAATCCAAGAATTGCATAGAAGATTTGAAGATGAAACTTGTTTCTGTAAGGGAAAAGAAGAAGGTTGATAATTCACTTCCACCATTGCCAGTTGCCCTTCCACCTTTACCAGTTGCATCATCACCGATGCAAAGGTTATCAAATGTGTCTTTCTTGAATGAAGGTTTCAATGGGTATGGTGTATGA 516 0.4186 MDSSSVRKSNIRKGKVEIKKVEEKSKRYVTFSKCKQGLFNKVTELSLLCQAETALVINSQKGKLYACGYPDSDFVIHYYHGGGGGYHNCAAKKASKKDLSIEDISFEQVEKSKNCIEDLKMKLVSVREKKKVDNSLPPLPVALPPLPVASSPMQRLSNVSFLNEGFNGYGV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00005 171 Gene3D - 23 102 IPR036879 GO:0003677|GO:0046983
Gabi1053g00005 171 PANTHER MADS BOX PROTEIN 13 127 - -
Gabi1053g00005 171 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Gabi1053g00005 171 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Gabi1053g00005 171 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gabi1053g00005 171 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gabi1053g00005 171 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gabi1053g00005 171 SUPERFAMILY SRF-like 12 80 IPR036879 GO:0003677|GO:0046983
Gabi1053g00005 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00005 Gabi-Chr1053 29195 29829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00005 13 79 MADS-box Gene Family AT5G51860 50.746 1.14e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00005 SRF-TF 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00005 - - gmx:121175156 104.76