Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1053g00004 ATGGATTCTTCCTCAATAAGAAAGCCAAACGTACGAAAGGGAAAGGTTGAGATCAAGATAGTGCATGAAAAAAGCAAGCGATATGTGACCTTCTCAAAACGCAAACAAGGGCTTTTCAACAAAGTCACTGAGCTATCCCTTCTTTGCCAAGCTGAAACTGCTTTGATCATCAATTCTCAGAAAGGAAATTTCTATGCCTGCGGCTATCCTGATCCGGACTCTGTCATCCACCGCTACCACGGCGGCAGCGAAGGAGGAGGGTATCACAACCATGCTGCTAAAAGGAGGTTCCAAGAGGGTGTTGAAACCTTAAGGCTAAAATATGAGACAACTGAATCTAAGTTGAAAGAGGAGAATATGCATCAAGAAGAGATCACTGAGGCAAAAAAGAATGGTTTGTTATTCACTGAATGGTGGGATTCCTCCATTGAGGATATGAGTTTTGAACAAGTTGAGGAATTTAAGAATTGCATAGAAGATTTGAAGATGAAACTTGTTGCTGCAAGGGGAAAGAAGAAGAAGAAGGTTGATAATTCACTTCCACCATTACCAGTTGCATCATCACCGATGCAAAGTTTATCAGATATTTCTTTCTTGAACGAGGGTTTTGATGGGTATGGTGCATGGAACTGTGGTGATTTTAGCCATTATTAA 654 0.4098 MDSSSIRKPNVRKGKVEIKIVHEKSKRYVTFSKRKQGLFNKVTELSLLCQAETALIINSQKGNFYACGYPDPDSVIHRYHGGSEGGGYHNHAAKRRFQEGVETLRLKYETTESKLKEENMHQEEITEAKKNGLLFTEWWDSSIEDMSFEQVEEFKNCIEDLKMKLVAARGKKKKKVDNSLPPLPVASSPMQSLSDISFLNEGFDGYGAWNCGDFSHY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1053g00004 217 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Gabi1053g00004 217 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Gabi1053g00004 217 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Gabi1053g00004 217 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Gabi1053g00004 217 Gene3D - 23 91 IPR036879 GO:0003677|GO:0046983
Gabi1053g00004 217 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Gabi1053g00004 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 66 IPR002100 GO:0003677|GO:0046983
Gabi1053g00004 217 PANTHER MADS BOX PROTEIN 13 165 - -
Gabi1053g00004 217 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1053g00004 Gabi-Chr1053 16117 16770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1053g00004 13 217 Type I MADS-box Gene Family AT5G60440 29.108 4.88e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1053g00004 SRF-TF 3.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1053g00004 - - gmx:100818284 165.622