Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1048g00002 ATGACTCTGGAGAATTATTTGATAGATGAAGATGGGGCTGGAGACCATTTTCCAGTGGGTATGCGTGTTTTGCTTGTTGACGATGATCAACTTTGTCTCGAAGTGTTAGGGAACATGCTTCGCAAATGCCAGTATCAGGTTACTACAACTATTCAGTCAATTGAGGCATTAGATATGTTGAGGACAAATAGAAATATGTTTGACCTCGTTATTACCGACGTAAATATGCCACACATGGATGGACTTAAGCTACTAGAGATAGTGGGACATGAAATGGACATACCTGTCATAATGTTGTCAGAATTGAGTGATATAGAGGTCGTGAAGAAAAGTGTTATACTTGGCGCATGTGACTATATAATTAAACCTCCTCGAATCCAAGTACTGCAGAATATATGGCAACATGTAGCGCGAAGAAAGATTGATTGCAAAGGTCAAAATACGCACTTCAATGAGGAGAAAGCATGCAATATAGCGGGGGAAGGTAGTCAAAGTATCACATTAGAAAGTAATGCTGACCATAATCAAATGCATGGTAAGAAAATGAAGGAACCGTGTGTGGAAGAAGAAAATGGTGAAATGAATGCAAAAGAGAATGAGGAACCTTCAAATCAAAAGAAGCCTCGTTTAAAATGGAATGATGACTTGCAAACAAAATTTCTTGCTGCAGTCAATTCACTGGGCATTGATAAGGCAGTTCCTAAGAAAATACTTCACTTGATGAATGTTGAAGGTCTTACAAGAGAAAATGTAGCAAGCCATCTACAGAAATACAAACTTGGCTGCCTCAAGAAGACAACTCAACAAGCTAGCATGGTTGCTGCGTCGCGTTGTAGTGATTCTTACGTGCAAATGAATTCAATAGATAGATATGGAAATTTTGACACCTCATTTGGATCAAGAAGAATCGATCCCTCTGCACCGGTCCAATCTATTGAGACACAAAATATAAACAACTCCATAGAAACACTTGGAAACATCCAGCCGTGCATGTTTTCTGCAAATCAAAGCTCAAGTTTATCACAGGGAATTCCAAACTCAATCGAGTTTAACCAATTTCAGCAGAGCAACTATATAACTAGTTTTGAGCAGTTTAGTTCAATTGATGGGTCAAATGGATATGTGGTTTCCTCTAACTTTCCTGGCAATTCTTCACTTTTGGATGAGGTTTTATATGAAGATCAACTGCCTCTGAATAGCTTGAAGTTTTCCTCCTCTAATTCTCATATAGGGAACAATCCAGTTGATTTTTCTTCCACAAGTGCTATTGGTATTCCTTTGGAGGATGCTAGAGGGGAGCTGCAATGCAAAGAAGGCTTACTTGACAATATCTTAAAGGATTCAAGCAAAAAGAGAATTGATGCATCCTTGGTTGGCCAACTGAGTGAGGCTGCTCCATCAATCACCCAATCCACAAAAGTTGATAAATCCTATTTAGATGCAGGAATGAAGTCAAATGATGCCTACATTTTGCAGCCCCAAGAAGAACTCACCGAGGAGGATATTTTTGGTACTTTACATGACATAGTGAGTGATATTGGTTAA 1545 0.389 MTLENYLIDEDGAGDHFPVGMRVLLVDDDQLCLEVLGNMLRKCQYQVTTTIQSIEALDMLRTNRNMFDLVITDVNMPHMDGLKLLEIVGHEMDIPVIMLSELSDIEVVKKSVILGACDYIIKPPRIQVLQNIWQHVARRKIDCKGQNTHFNEEKACNIAGEGSQSITLESNADHNQMHGKKMKEPCVEEENGEMNAKENEEPSNQKKPRLKWNDDLQTKFLAAVNSLGIDKAVPKKILHLMNVEGLTRENVASHLQKYKLGCLKKTTQQASMVAASRCSDSYVQMNSIDRYGNFDTSFGSRRIDPSAPVQSIETQNINNSIETLGNIQPCMFSANQSSSLSQGIPNSIEFNQFQQSNYITSFEQFSSIDGSNGYVVSSNFPGNSSLLDEVLYEDQLPLNSLKFSSSNSHIGNNPVDFSSTSAIGIPLEDARGELQCKEGLLDNILKDSSKKRIDASLVGQLSEAAPSITQSTKVDKSYLDAGMKSNDAYILQPQEELTEEDIFGTLHDIVSDIG 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1048g00002 514 MobiDBLite consensus disorder prediction 187 209 - -
Gabi1048g00002 514 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Gabi1048g00002 514 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Gabi1048g00002 514 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Gabi1048g00002 514 SMART REC_2 21 133 IPR001789 GO:0000160
Gabi1048g00002 514 CDD REC_typeB_ARR-like 23 137 - -
Gabi1048g00002 514 FunFam Two-component response regulator 203 266 - -
Gabi1048g00002 514 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Gabi1048g00002 514 SUPERFAMILY Homeodomain-like 205 260 IPR009057 -
Gabi1048g00002 514 Gene3D - 20 155 - -
Gabi1048g00002 514 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Gabi1048g00002 514 SUPERFAMILY CheY-like 20 141 IPR011006 -
Gabi1048g00002 514 Gene3D - 203 265 - -
Gabi1048g00002 514 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 335 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1048g00002 Gabi-Chr1048 13823 16425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1048g00002 13 357 Response Regulator Gene Family AT2G25180 44.504 1.14e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi1048g00002 Response_reg 2.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1048g00002 K14491 - qsa:O6P43_022161 429.098