Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1048g00001 ATGACTCTGGAGAATTATTTGATAGATGAAGATGGGGCTGGAGACCATTTTCCAGTGGGTATGCGTGTTTTGCTTGTTGACGATGATCAACTTTGTCTCGAAGTGTTAGGGAACATGCTTCGCAAATGCCAGTATCAGGTTACTACAACTATTCAGTCAATTGAGGCATTAGATATGTTGAGGACAAATAGAAATATGTTTGACCTCGTTATTACCGACGTAAATATGCCACACATGGATGGACTTAAGCTACTAGAGATAGTGGGACATGAAATGGACATACCTGTCATAATGTTGTCAGAATTGAGTGATATAGAGGTCGTGAAGAAAAGTGTTATACTTGGCGCATGTGACTATATAATTAAACCTCCTCGAATCCAAGTACTGCAGAATATATGGCAACATGTAGCGCGAAGAAAGATTGATTGCAAAGGTCAAAATACGCACTTCAATGAGGAGAAAGCATGCAATATAGCGGGGGAAGGTAGTCAAAGTATAAGTAATGCTGACCATAATCAAATGCATGGTAAGAAAAGGAAGGAACCGTGTGTGGAAGAAGAAAATGGTGAAATGAATGCAAAAGAGAATGAGGAACCTTCAAATCAAAAGAAGCCTCGTTTAAAATGGAATGATGACTTGCAAACAAAATTTCTTGCTGCAGTCAATTCACTGGGCATTGATAAGGCAGTTCCTAAGAAAATACTTCACTTGATGAATGTTGAAGGTCGGAAACACTTGGAAACATCCAGCCGTGCATGTTTTCTGCAAATCAAAGCTCAAGTTTATCACAGGGAATTCCACCAATTTCAGCAGAGCAACTATATAACTAGTTTTGAGCAGTTTAGTTCAATTGATGGGTCAAATGGATATGTGGTTTCCTCTAACTTTCCTGGCAATTCTTCACTTTTGGATGAGGTTTTATATGAAGATCAACTGCCTCTGAATAGCTTGAAGTTTTCCTCCTCTAATTCTCATATAGGGAACAATCCAGTTGATTTTTCTTCCACAAGTGCTATTGGTATTCCTTTGGAGGATGCTAGAGGGGAGCTGCAATGCAAAGAAGGCTTACTTGACAATATCTTAAAGGATTCAAGCAAAAAGAGAATTGATGCATCCTTGGTTGGCCAACTGAGTGAGGCTGCTCCATCAATCACCCAATCCACAAAAGTTGATAAATCCTATTTAGATGCAGGAATGAAGTCAAATGATGCCTACATTTTGCAGCCCCAAGAAGAACTCACCGAGGAGGATATTTTTGGTACTTTACATGACATAGTGAGTGATATTGGTTAA 1293 0.3913 MTLENYLIDEDGAGDHFPVGMRVLLVDDDQLCLEVLGNMLRKCQYQVTTTIQSIEALDMLRTNRNMFDLVITDVNMPHMDGLKLLEIVGHEMDIPVIMLSELSDIEVVKKSVILGACDYIIKPPRIQVLQNIWQHVARRKIDCKGQNTHFNEEKACNIAGEGSQSISNADHNQMHGKKRKEPCVEEENGEMNAKENEEPSNQKKPRLKWNDDLQTKFLAAVNSLGIDKAVPKKILHLMNVEGRKHLETSSRACFLQIKAQVYHREFHQFQQSNYITSFEQFSSIDGSNGYVVSSNFPGNSSLLDEVLYEDQLPLNSLKFSSSNSHIGNNPVDFSSTSAIGIPLEDARGELQCKEGLLDNILKDSSKKRIDASLVGQLSEAAPSITQSTKVDKSYLDAGMKSNDAYILQPQEELTEEDIFGTLHDIVSDIG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1048g00001 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 242 IPR006447 GO:0003677
Gabi1048g00001 430 Gene3D - 200 264 - -
Gabi1048g00001 430 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Gabi1048g00001 430 MobiDBLite consensus disorder prediction 162 206 - -
Gabi1048g00001 430 SMART REC_2 21 133 IPR001789 GO:0000160
Gabi1048g00001 430 CDD REC_typeB_ARR-like 23 137 - -
Gabi1048g00001 430 SUPERFAMILY Homeodomain-like 202 252 IPR009057 -
Gabi1048g00001 430 SUPERFAMILY CheY-like 20 141 IPR011006 -
Gabi1048g00001 430 Gene3D - 20 155 - -
Gabi1048g00001 430 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Gabi1048g00001 430 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 306 IPR045279 GO:0009736
Gabi1048g00001 430 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1048g00001 Gabi-Chr1048 77 2437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1048g00001 13 290 Response Regulator Gene Family AT2G25180 48.399 1.89e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1048g00001 Response_reg 2.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1048g00001 K14491 - qsa:O6P43_003010 294.278