Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00016 ATGGGGAAATCACCAGGAAAATGGATCAAAACCGTGCTATTTGGGAAAAAGTCATCCAAATCAAGTATTTCAAAAGGAAAAGAGAAGCTTGTTAATAACAAAGAAGCAGTGGTTGCTTCCAATGTGTTCGAAAATGGTTTGGCTTTAGATCCATCCCCCAATAAGATCGACAGAAATGAGGAGCACCTGGAACCAAGGAATGAAGAATCTGAAAGTCTTGTACCTGGGAACCAAGAAATGGACATCATGGGATCTGTTGACCAAGATGCATCACCTGATCCAGAGAAAATAAGGCAGGAGGAAGCAGCAACAAAGGCGCAGGCTGCTTTCAAAGGTTACTTGGCTCGCAGGGCTTTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGCGGGCACTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTGTATGCATGGGATTGTAAAGTTACAAGCACTTACTCGTGGAGGAAGGGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAAACTATTTAAGCCTCTGGATGGCAAACTTGGTGAGCCTGTTGGTATTCCCTCAAAAATTTCAAAGCTGTCAGCGAATTCTTTCACCTGCAAGCTTCTTGCTCCATCAACTACAATAATGGCCCTGCACATACAATATGTTAGTGGGGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTCTGGAAACCAGTTCCGCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATATTTCAATTGGAGAAGCTCAAATTAGCAAGTCAAAACGTACCAACAGGAAGCTTCCTACTGCAAATTTCGAATCAGTCCCGGTGCAAACAAATCCTGACTTTGAGAAACCAAAACGTAATTTCCGGAAAATCTCAAGCCAATTGTTAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATGACCCAGTTGTTGGGAATGCTGTTCTGTCAGAAGTTGAATGTGAGACCCCAAAGCAGCATTTGGAAAAAGCAACAGTTACTGCAGTTCATGATGCTGTTTCAGAACAAGGGCTCATTACTTCTAATGAAGAGATCAAGAAGGAAGAAACCCTGACCATCTCCAGTGTACCTGATATGGAAATTACTCCAAGACCCTCAGTTAACAAGGAGGTGTGTGACATTCCAAGCAGTTATCAAGTGAGTGTAGAATCAAAGCCCTTCGTAGAGACTACAACTGAAGATAGAAACACTTCTGTTGACGAAATTAAAAATGTGCTGAGCAATCTACCAGAGACTATTTTTAAAGATGAAAACTCTCCATTAAAAAATGGAGATTTGAATCATAAGGAAGAAATAACGGGTAATGAAAACCAGAAGCCTACTCGGAAAGCCTCAATCTTGGTGAAGCACGAGCATGCAGAGAATGGTTTAGTGAATAGTCCAACATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTAAGGTTACAAGGGTCTCCAAGGTTGGGGCAAGATGGAAGTGAGACGAACAACCCTGTTGGGCGTTCAACCAACAGCAAGATTAGTTCACATTCACCGAGGACACGGAGATCAATTCAAGGAGGTGGCAAAGGGAGCCACAAAAGTGACAGGACTATACCATCTTCTACAGGGAAGGTAATTCAAGCAGACTGGAGGAGGTGA 1734 0.4239 MGKSPGKWIKTVLFGKKSSKSSISKGKEKLVNNKEAVVASNVFENGLALDPSPNKIDRNEEHLEPRNEESESLVPGNQEMDIMGSVDQDASPDPEKIRQEEAATKAQAAFKGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMHGIVKLQALTRGGRVRQSDVGFEIHEKCKLFKPLDGKLGEPVGIPSKISKLSANSFTCKLLAPSTTIMALHIQYVSGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNISIGEAQISKSKRTNRKLPTANFESVPVQTNPDFEKPKRNFRKISSQLLDPEQENPQSELEKVKRNLRKIHDPVVGNAVLSEVECETPKQHLEKATVTAVHDAVSEQGLITSNEEIKKEETLTISSVPDMEITPRPSVNKEVCDIPSSYQVSVESKPFVETTTEDRNTSVDEIKNVLSNLPETIFKDENSPLKNGDLNHKEEITGNENQKPTRKASILVKHEHAENGLVNSPTLPSYMAATESAKAKLRLQGSPRLGQDGSETNNPVGRSTNSKISSHSPRTRRSIQGGGKGSHKSDRTIPSSTGKVIQADWRR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00016 577 Gene3D - 97 147 - -
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 455 476 - -
Gabi1043g00016 577 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Gabi1043g00016 577 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Gabi1043g00016 577 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 46 75 - -
Gabi1043g00016 577 SMART iq_5 121 142 IPR000048 GO:0005515
Gabi1043g00016 577 SMART iq_5 98 120 IPR000048 GO:0005515
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 449 476 - -
Gabi1043g00016 577 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 259 292 - -
Gabi1043g00016 577 PANTHER IQ-DOMAIN 5-RELATED 1 541 - -
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 508 577 - -
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 519 549 - -
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 54 69 - -
Gabi1043g00016 577 MobiDBLite consensus disorder prediction 248 302 - -
Gabi1043g00016 577 Pfam Protein of unknown function (DUF4005) 486 559 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00016 Gabi-Chr1043 154294 162702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00016 1 566 IQD Protein Family AT1G74690 44.590 3.72e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00016 - - gmx:100786022 850.506