Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00013 ATGGAATTGCGTACCGGTTTTCCGTTACTGTTTCAACAATACAAGGCGTTGTTGAAGAAGAATTTGTTGCTGTCGTGGCGTTACAAGAGGGCGAGTCTCCTTCAACTCTTGTCTCCTCTCATATTCATATTCCTCATCTTCGCCATTGATAAAGCCATTAAGACTCAGTATTCAAACACCTCTTCTTACAAGAGCGTCACCGATCCTAATCCACAACCCTCTCCTCCTATCCCTCCCTGCGAGACCAAGTTCTTCGTCAAGCTTCCCTGTTATGATTTCGTGTGGAGCGGTGATGATAATCCCAAGTTTCACACCATTGTTGACCGTATCATGAATAACAACCCAGGCAGGCCTATATCTCCCGCCAAGGTTAAATCCTTTAAGGATAAAGGTGAAGTGGATGCGTGGCTTTTCAGTAATCCTATGTATTGTCCAGGGGCTCTACATTTCATGGAAAAAAATAACACTGTTATCAGCTATGGTGTACAGACAAACTCAACTAATCTTCAGAGGCGAGGGAAATATGAAGACCCCACTTTTGCGTTTCAACTCCCTCTTCAGCTTGCTGCAGAGCGTGAAATTGCCAGATACCTTATTGGTGACCCAAACTTCAGCTGGAATGTCTTTTTGAAGGAATTTGCTCATCCAGCCATGAGCCCCTTCTCTGCAGTGGGTTCAATTGGTCCAGCATTTTTCCTTGCTATTGCCATGTTTAATTTTGTTCTTCAGATGAGCTCTTTGGTGACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGAGCATGATGGGCCTTTATGACTCTGCTTACTGGTTATCCTGGCTCACCTGGGAGGCAGTTGTTACACTCCTATCATCCCTTCTCATAGTTCTCTTTGGAATGATGTTTCAGTTTCGCTTTTTCTTGAAAAACAGTTTTGGGGTTCTATTCCTTGTGTTCTTCCTGTTTGAACTCAATATGACTGGCTTAGCCTTCATGTTATCGGCTTTCATTCGTAAATCATCTTCAGCTACAACTTTAGGCTTCTCCATATTCATTATAGGCTTCCTGACTCAGCTTGTTACACAAGCAGGATTTCCTTACACAACAAGCATCTCCAAAACTTTCCGGAATATCTGGTCATTATTCCCGCCCAATCCTTTTTCTCAAGCTCTACAAGTGCTTTCAGATGCGGTTTCAACTCCTGAAGATGATGGTCTTAGCTGGAGTAAACGGGGAGAATGCGCTCCTAATGATGATAACTGTGTGATAACTATTAATGATATTTATATATGGCTTTTGGTCACGTTCATACTATGGTTTGTTCTGGCCATCTACTTCGACAATATAATTCCAAATGCATCAGGGGTGAGAAAATCAATGCTATACTTTCTAAATCCCGGTTATTGGATGGGAAAAGGAGGACAAAAAGTAAAAGAGGGCAGGATTTGTAGTTGCATAGGTTCAGCCCCACATCAAGAGCATAGTACACCAGATGATGAAGATGTCCTTGAAGAGGAAAACACAGTAAAACAGAAACTAACAGAAGGTGTGGTTGACGCAAGCGTTGCTGTTCAGATACATGGCCTTGCGAAGACATATCCTGGTGCACGGAACATTGGTTGCTGTAAATGTAAAAGAACTCCTCCTTACAATGCTGTTAAGGATTTATGGGTGAACCTCGAAAAGGATCAGTTATTTTGTCTTTTAGGACCCAATGGAGCTGGAAAGACTACAGCTATTAATTGTTTGACTGGGATAACTCCAGTAACTGACGGAGATGCATTGATTTATGGAAATTCTGTCCGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCCTATGGGATGCGCTGTCTGGTGAAGAACACCTCCAACTATTTGCTACTATTAAAGGCCTGTCCCCAACTTCCATACAATCAGTATGTATGCTTAGGCCTGAAATCGTTCTACTCACAGAATCAGCTAAAGTGAGAGCTGGAAGTTATAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACAACTGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGACGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTTTAAGTGACCGCATAGGAATCATGGCAAAGGGAAGGCTTCGATGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTTATTGCTAATATCAGCTTCTATGGAAACAATATCCATCACAGTCCTCCCAACGGAGATGCAATTTCCACAGAACAGCGCGATGCAGTGAAGCAGTTCTTTAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTTCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTTCTGACAAATTTTTTTGCGGAGCTCCAAGATAGAGAAGAAAAATTTGGCATATCTGACATCCAGCTGGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTAGAAAGCGCTACAGCTGAAGGGAGCCTAGTGACTCTGACCTTAACATCTGGAGAGTCTGCGCAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGAAAGCCCCACAGGGTCTATGGTAGAAGTATACTGGGAGCAAGATGACACTGGTGCTCTATGTATTTCTGGCCACTCGCAGAAAGTTCCAATTCCTCCTGGCGTTGAACTATCATCATCTCCTGCTGCAAGGCAACGTAGAAACTGGCGCCGGTCAGCGCCAGTTCATGGGGTTGTGATCAATCCCAGTCAAGTTAGTTCAGTCAATTTTCAGTGA 2898 0.43 MELRTGFPLLFQQYKALLKKNLLLSWRYKRASLLQLLSPLIFIFLIFAIDKAIKTQYSNTSSYKSVTDPNPQPSPPIPPCETKFFVKLPCYDFVWSGDDNPKFHTIVDRIMNNNPGRPISPAKVKSFKDKGEVDAWLFSNPMYCPGALHFMEKNNTVISYGVQTNSTNLQRRGKYEDPTFAFQLPLQLAAEREIARYLIGDPNFSWNVFLKEFAHPAMSPFSAVGSIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMSMMGLYDSAYWLSWLTWEAVVTLLSSLLIVLFGMMFQFRFFLKNSFGVLFLVFFLFELNMTGLAFMLSAFIRKSSSATTLGFSIFIIGFLTQLVTQAGFPYTTSISKTFRNIWSLFPPNPFSQALQVLSDAVSTPEDDGLSWSKRGECAPNDDNCVITINDIYIWLLVTFILWFVLAIYFDNIIPNASGVRKSMLYFLNPGYWMGKGGQKVKEGRICSCIGSAPHQEHSTPDDEDVLEEENTVKQKLTEGVVDASVAVQIHGLAKTYPGARNIGCCKCKRTPPYNAVKDLWVNLEKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGNSVRSSTGMSNIRKLIGVCPQFDILWDALSGEEHLQLFATIKGLSPTSIQSVCMLRPEIVLLTESAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNIHHSPPNGDAISTEQRDAVKQFFKNHLDVVPKEENNNFLTFVIPHDREALLTNFFAELQDREEKFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESAQIPIGARFVGIPGTESAESPTGSMVEVYWEQDDTGALCISGHSQKVPIPPGVELSSSPAARQRRNWRRSAPVHGVVINPSQVSSVNFQ 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00013 965 Pfam ABC transporter 547 691 IPR003439 GO:0005524
Gabi1043g00013 965 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 762 IPR003439 GO:0005524
Gabi1043g00013 965 Pfam ABC-2 family transporter protein 32 438 IPR013525 GO:0016020|GO:0140359
Gabi1043g00013 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 748 IPR027417 -
Gabi1043g00013 965 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 492 858 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00013 965 SMART AAA_5 555 739 IPR003593 GO:0016887
Gabi1043g00013 965 FunFam ABC transporter A family member 2 507 770 - -
Gabi1043g00013 965 CDD ABC_subfamily_A 517 750 - -
Gabi1043g00013 965 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524|GO:0016887
Gabi1043g00013 965 Gene3D - 511 762 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00013 Gabi-Chr1043 145148 152984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00013 541 761 Calmodulin-binding Proteins AT2G36910 21.721 1.11e-08 57.4