Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00011 ATGTTCCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATACAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGTGACAAGTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTTTGTTGCAAGTGCCTGCTCCACAATATCGTGCTTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACTGGCACTAACCAATCTTTTGGAGAAATTTTATCTGGGAATATGATCCCAAGTACCTTTACCATAAATAACTCCGATATTATGGGTAGTTTGGCAGCAAATGTCGTGGGATCACCATCAAAGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTTACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCACCTTTTGCATTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGATCTGGTACCAAAATTTTGTTTGAGTTTGTAAAGGGAATGCCAAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTTCTGGGGGCTCTCTTCTTTACTTGGGTCATCCTGCAACTTTTCCCTATTGTCCTGACATCGCTTATTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCCATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAAAGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTGCAAATTTCGCTGGCATTTCTATTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCGATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATTTCGTGGGTTATATGAGTTTGCACAATCTTCATTCAATGCGGATGCTTTGGGGACTAATGGTATGCGGTGGAGAGATCTAAGTAATAGCACAAATGGCATGAAAGAGGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTCTTTTCGCATATTACATGGATCAAGTTTTGTCATCAGGAAGTGGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCGTTTAGGAAGCCTAGTATTCAAAGGCATGGATCTAAAGTTTTTGTTCAGATGGAGAAACCGGACGTCAATCAAGAGAGAGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGCGAAAGGTCTATCCAGGAAGGGATGGTAACCCAGAGAAATTTGCAGTGCAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAAACTTCATTTATCAACATGATGATTGGCCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTAACAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATGTATGGATCATGAAAAGCATGTAGAGAACTTGGTTCAACAACTCTCCCCAAATGCTAACAAGATATACCATATCTCTGGTACCCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCCAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGTGGCTCAGGCATTTGACATCTTGTCATAA 2691 0.4028 MFPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDKCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRASCRNNGSCPVTMFFTGTNQSFGEILSGNMIPSTFTINNSDIMGSLAANVVGSPSKTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSQQEVTCAQGLRLWRNSSSEVNNELFKGYRRGYTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFAPFALARIPRSVNLVSNAYLQFLLGSGTKILFEFVKGMPKPETPIKFDLASLLGALFFTWVILQLFPIVLTSLIYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTKNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFRFFVQDTSFPRGWIIVMELYPGFALFRGLYEFAQSSFNADALGTNGMRWRDLSNSTNGMKEVLIIMFVEWVLVLLFAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRHGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVQGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTCMDHEKHVENLVQQLSPNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARVAQAFDILS 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00011 896 FunFam ABC transporter A family member 7 563 839 - -
Gabi1043g00011 896 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524|GO:0016887
Gabi1043g00011 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 802 IPR027417 -
Gabi1043g00011 896 Pfam ABC-2 family transporter protein 208 505 IPR013525 GO:0016020|GO:0140359
Gabi1043g00011 896 CDD ABC_subfamily_A 578 799 - -
Gabi1043g00011 896 Gene3D - 566 838 IPR027417 -
Gabi1043g00011 896 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 540 890 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00011 896 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 574 811 IPR003439 GO:0005524
Gabi1043g00011 896 SMART AAA_5 604 787 IPR003593 GO:0016887
Gabi1043g00011 896 Pfam ABC transporter 596 740 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00011 Gabi-Chr1043 84915 96949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00011 550 819 Calmodulin-binding Proteins AT2G36910 22.776 5.23e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00011 - - gmx:100805474 1531.15