Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00010 ATGGAAAATGGAAACACGTCCAATGAACCCGCGAGCTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTCGGCTAATCATGTTCCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATACAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGTGACAAGTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTTTGTTGCAAGTGCCTGCTCCACAATATCGTGCTGTGAGAACGGATTTTCTTCCCTTTTCTGATTTGCCAAACCAGTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACTGGCACTAACCAATCTTTTGGAGAAAGTATATCATCAAAGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCATTTTTGTTTTCCACTGGATCTAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTTACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCACCTTTTGCATTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGATCTGGTACCAAAATTTTGTTTGAGTTTGTAAAGGGAATGCCAAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTTCTGGGGGCTCTCTTCTTTACTTGGGTCATCCTGCAACTTTTCCCTATTGTCCTGACATCGCTTATTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCCATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAAAGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTGCAAATTTCGCTGGCATTTCTATTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCGATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATTTCGTGGGTTATATGAGTTTGCACAATCTTCATTCAATGCGGATGCTTTGGGGACTAATGGTATGCGGTGGAGAGATCTAAGTAATAGCACAAATGGCATGAAAGAGGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTCTTTTCGCATATTACATGGATCAAGTTTTGTCATCAGGAAGTGGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCGTTTAGGAAGCCTAGTATTCAAAGGCATGGATCTAAAGTTTTTGTTCAGATGGAGAAACCGGACGTCAATCAAGAGAGAGAGAAGGTGGAGCAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGCGAAAGGTCTATCCAGGAAGGGATGGTAACCCAGAGAAATTTGCAGTGCAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAAACTTCATTTATCAACATGATGATTGGCCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTAACAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATGTATGGATCATGAAAAGCATGTAGAGAACTTGGTTCAACAACTCTCCCCAAATGCTAACAAGATATACCATATCTCTGGTACCCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCCAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGTGGCTCAGGCATTTGACATCTTGTCATAA 2787 0.404 MENGNTSNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMFPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDKCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRAVRTDFLPFSDLPNQSCRNNGSCPVTMFFTGTNQSFGESISSKTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSHFCFPLDLEVTCAQGLRLWRNSSSEVNNELFKGYRRGYTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFAPFALARIPRSVNLVSNAYLQFLLGSGTKILFEFVKGMPKPETPIKFDLASLLGALFFTWVILQLFPIVLTSLIYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTKNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFRFFVQDTSFPRGWIIVMELYPGFALFRGLYEFAQSSFNADALGTNGMRWRDLSNSTNGMKEVLIIMFVEWVLVLLFAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRHGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVQGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTCMDHEKHVENLVQQLSPNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARVAQAFDILS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00010 928 Pfam ABC-2 family transporter protein 253 537 IPR013525 GO:0016020|GO:0140359
Gabi1043g00010 928 Gene3D - 598 869 IPR027417 -
Gabi1043g00010 928 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Gabi1043g00010 928 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 843 IPR003439 GO:0005524
Gabi1043g00010 928 CDD ABC_subfamily_A 610 831 - -
Gabi1043g00010 928 FunFam ABC transporter A family member 7 595 871 - -
Gabi1043g00010 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 834 IPR027417 -
Gabi1043g00010 928 SMART AAA_5 636 819 IPR003593 GO:0016887
Gabi1043g00010 928 Pfam ABC transporter 628 772 IPR003439 GO:0005524
Gabi1043g00010 928 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 572 922 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00010 Gabi-Chr1043 84915 97150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00010 582 851 Calmodulin-binding Proteins AT2G36910 22.776 6.76e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00010 - - gmx:100805474 1581.23