Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00008 ATGGAAAATGGAAACACGTCCAATGAACCCGCGAGCTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTCGGCTAATCATGTTCCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATACAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGTGACAAGTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTTTGTTGCAAGTGCCTGCTCCACAATATCGTGCTGTGAGAACGGATTTTCTTCCCTTTTCTGATTTGCCAAACCAGTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACTGGCACTAACCAATCTTTTGGGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTTACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCACCTTTTGCATTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGATCTGGTACCAAAATTTTGTTTGAGTTTGTAAAGGGAATGCCAAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTTCTGGGGGCTCTCTTCTTTACTTGGGTCATCCTGCAACTTTTCCCTATTGTCCTGACATCGCTTATTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCCATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAAAGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTGCAAATTTCGCTGGCATTTCTATTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCGATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATTTCGTGGGTTATATGAGTTTGCACAATCTTCATTCAATGCGGATGCTTTGGGGACTAATGGTATGCGGTGGAGAGATCTAAGTAATAGCACAAATGGCATGAAAGAGGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTCTTTTCGCATATTACATGGATCAAGTTTTGTCATCAGGAAGTGGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCGTTTAGGAAGCCTAGTATTCAAAGGCATGGATCTAAAGTTTTTGTTCAGATGGAGAAACCGGACGTCAATCAAGAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGCGAAAGGTCTATCCAGGAAGGGATGGTAACCCAGAGAAATTTGCAGTGCAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAAACTTCATTTATCAACATGATGATTGGCCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTAACAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATGTATGGATCATGAAAAGCATGTAGAGAACTTGGTTCAACAACTCTCCCCAAATGCTAACAAGATATACCATATCTCTGGTACCCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCCAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGTGGCTCAGGCATTTGACATCTTGTCATAA 2733 0.405 MENGNTSNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMFPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDKCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRAVRTDFLPFSDLPNQSCRNNGSCPVTMFFTGTNQSFGTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSQQEVTCAQGLRLWRNSSSEVNNELFKGYRRGYTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFAPFALARIPRSVNLVSNAYLQFLLGSGTKILFEFVKGMPKPETPIKFDLASLLGALFFTWVILQLFPIVLTSLIYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTKNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFRFFVQDTSFPRGWIIVMELYPGFALFRGLYEFAQSSFNADALGTNGMRWRDLSNSTNGMKEVLIIMFVEWVLVLLFAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRHGSKVFVQMEKPDVNQELLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVQGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTCMDHEKHVENLVQQLSPNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARVAQAFDILS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00008 910 Pfam ABC transporter 610 754 IPR003439 GO:0005524
Gabi1043g00008 910 Pfam ABC-2 family transporter protein 228 525 IPR013525 GO:0016020|GO:0140359
Gabi1043g00008 910 Gene3D - 580 851 IPR027417 -
Gabi1043g00008 910 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 567 904 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00008 910 CDD ABC_subfamily_A 592 813 - -
Gabi1043g00008 910 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524|GO:0016887
Gabi1043g00008 910 SMART AAA_5 618 801 IPR003593 GO:0016887
Gabi1043g00008 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 816 IPR027417 -
Gabi1043g00008 910 FunFam ABC transporter A family member 7 577 853 - -
Gabi1043g00008 910 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 588 825 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00008 Gabi-Chr1043 84915 97150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00008 554 833 Calmodulin-binding Proteins AT2G36910 22.680 1.01e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00008 - - gmx:100805474 1566.21