Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00006 ATGGAAAATGGAAACACGCCCAATGAACCCGCTAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTAGGCTAATCATGTACCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATCCAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGGGACAATTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTCTGTTGCAAGTGCCTGCTCCACAATATCGTGCTGTGAGAACGGATTTTCTTCCCTTTTCTGATTTGCCAAACCAGTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACCGGCACTAACCAATCTTTTGGAGAAAGTATGTTTTCCTCTTTTACATACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCCAAGTTTTTGTTTTCCACCGGATCTAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTAACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCATCTATTGCGTTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCTAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCCAAATGTTGTTTGAGTTTGTAAAGGAAATGCCGAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTACTGGGGCCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTATTATCCTGACATCGCTTGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCTATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAATGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTACAAATATCGCTGGCATTTCTGTTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAGTTGCATATATAGGTGTGTTTGGAACTGGGCTCTTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATCTTCATTCAATGGGAATGCTTTGGGGACTAATGGAATGCGGTGGAAAGATCTAAGTAATAGCACGAATGGCATGAAAGATGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTTTTTTGGCATATTACATGGATCAAGTTTTGTCATCTGGAAGTGGGAAAAGTCCTCTCTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTAGGAAGCCTAGTATCCAAAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCAGATGTCAATCAAGAGAGAGAGAAGGTGGAACAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATTGGTCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTATCAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAAAAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATCGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATCTATGGATCATGAAAAGCATGTGGAGAACTTGGTGCAACAGCTCTCCTCAAATGCTAACAAGATATACCATATCTCTGGTACGCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCAAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACGGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAA 2790 0.4057 MENGNTPNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMYPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDNCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRAVRTDFLPFSDLPNQSCRNNGSCPVTMFFTGTNQSFGESMFSSFTYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSPSFCFPPDLEVTCAQGLRLWRNSSSEVNNELFKGYRRGNTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFASIALARIPRSVNLVSNAYLQFLLGPGTQMLFEFVKEMPKPETPIKFDLASLLGPLFFTWVILQLFPIILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVVAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQSSFNGNALGTNGMRWKDLSNSTNGMKDVLIIMFVEWVLVLFLAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVKGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLSGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKKTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTSMDHEKHVENLVQQLSSNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00006 929 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524|GO:0016887
Gabi1043g00006 929 Pfam ABC transporter 629 773 IPR003439 GO:0005524
Gabi1043g00006 929 CDD ABC_subfamily_A 611 832 - -
Gabi1043g00006 929 FunFam ABC transporter A family member 7 596 872 - -
Gabi1043g00006 929 Gene3D - 599 875 IPR027417 -
Gabi1043g00006 929 SMART AAA_5 637 820 IPR003593 GO:0016887
Gabi1043g00006 929 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 844 IPR003439 GO:0005524
Gabi1043g00006 929 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 573 923 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00006 929 Pfam ABC-2 family transporter protein 253 538 IPR013525 GO:0016020|GO:0140359
Gabi1043g00006 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 835 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00006 Gabi-Chr1043 44392 53721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00006 583 866 Calmodulin-binding Proteins AT2G36910 23.051 4.46e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00006 - - gmx:100805474 1592.02