Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00005 ATGGAAAATGGAAACACGCCCAATGAACCCGCTAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTAGGCTAATCATGTACCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATCCAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGGGACAATTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTCTGTTGCAAGTGCCTGCTCCACAATATCGTGCTGTGAGAACGGATTTTCTTCCCTTTTCTGATTTGCCAAACCAGTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACCGGCACTAACCAATCTTTTGGAGAAATTTTATCTGGGAATATGATCCCAAGTACCTTTACCATAAATAATTCCGATGTTATGGGTAGTCTGGCAACAAATGTCGTGGGATCATCATCAAAGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTAACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCATCTATTGCGTTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCTAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCCAAATGTTGTTTGAGTTTGTAAAGGAAATGCCGAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTACTGGGGCCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTATTATCCTGACATCGCTTGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCTATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAATGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTACAAATATCGCTGGCATTTCTGTTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAGTTGCATATATAGGTGTGTTTGGAACTGGGCTCTTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATCTTCATTCAATGGGAATGCTTTGGGGACTAATGGAATGCGGTGGAAAGATCTAAGTAATAGCACGAATGGCATGAAAGATGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTTTTTTGGCATATTACATGGATCAAGTTTTGTCATCTGGAAGTGGGAAAAGTCCTCTCTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTAGGAAGCCTAGTATCCAAAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCAGATGTCAATCAAGAGAGAGAGAAGGTGGAACAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATTGGTCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTATCAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAAAAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATCGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATCTATGGATCATGAAAAGCATGTGGAGAACTTGGTGCAACAGCTCTCCTCAAATGCTAACAAGATATACCATATCTCTGGTACGCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCAAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACGGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAA 2850 0.406 MENGNTPNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMYPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDNCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRAVRTDFLPFSDLPNQSCRNNGSCPVTMFFTGTNQSFGEILSGNMIPSTFTINNSDVMGSLATNVVGSSSKTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSQQEVTCAQGLRLWRNSSSEVNNELFKGYRRGNTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFASIALARIPRSVNLVSNAYLQFLLGPGTQMLFEFVKEMPKPETPIKFDLASLLGPLFFTWVILQLFPIILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVVAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQSSFNGNALGTNGMRWKDLSNSTNGMKDVLIIMFVEWVLVLFLAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVKGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLSGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKKTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTSMDHEKHVENLVQQLSSNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00005 949 Pfam ABC transporter 649 793 IPR003439 GO:0005524
Gabi1043g00005 949 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 593 943 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00005 949 SMART AAA_5 657 840 IPR003593 GO:0016887
Gabi1043g00005 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
Gabi1043g00005 949 Gene3D - 619 895 IPR027417 -
Gabi1043g00005 949 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 627 864 IPR003439 GO:0005524
Gabi1043g00005 949 CDD ABC_subfamily_A 631 852 - -
Gabi1043g00005 949 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Gabi1043g00005 949 Pfam ABC-2 family transporter protein 266 558 IPR013525 GO:0016020|GO:0140359
Gabi1043g00005 949 FunFam ABC transporter A family member 7 616 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00005 Gabi-Chr1043 44392 53721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00005 603 886 Calmodulin-binding Proteins AT2G36910 23.051 6.04e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00005 - - gmx:100805474 1652.49