Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00004 ATGGAAAATGGAAACACGCCCAATGAACCCGCTAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTAGGCTAATCATGTACCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATCCAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGGGACAATTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTCTGTTGCAAGTGCCTGCTCCACAATATCGTGCTGTGAGAACGGATTTTCTTCCCTTTTCTGATTTGCCAAACCAGTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACCGGCACTAACCAATCTTTTGGAGAAATTTTATCTGGGAATATGATCCCAAGTACCTTTACCATAAATAATTCCGATGTTATGGGTAGTCTGGCAACAAATGTCGTGGGATCATCATCAAAGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTAACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCATCTATTGCGTTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCTAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCCAAATGTTGTTTGAGTTTGTAAAGGAAATGCCGAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTACTGGGGCCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTATTATCCTGACATCGCTTGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGGTTAAAATTCTTCACAATGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTACAAATATCGCTGGCATTTCTGTTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAGTTGCATATATAGGTGTGTTTGGAACTGGGCTCTTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATCTTCATTCAATGGGAATGCTTTGGGGACTAATGGAATGCGGTGGAAAGATCTAAGTAATAGCACGAATGGCATGAAAGATGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTTTTTTGGCATATTACATGGATCAAGTTTTGTCATCTGGAAGTGGGAAAAGTCCTCTCTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTAGGAAGCCTAGTATCCAAAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCAGATGTCAATCAAGAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATTGGTCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTATCAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAAAAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATCGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATCTATGGATCATGAAAAGCATGTGGAGAACTTGGTGCAACAGCTCTCCTCAAATGCTAACAAGATATACCATATCTCTGGTACGCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCAAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACGGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAA 2754 0.407 MENGNTPNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMYPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDNCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRAVRTDFLPFSDLPNQSCRNNGSCPVTMFFTGTNQSFGEILSGNMIPSTFTINNSDVMGSLATNVVGSSSKTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSQQEVTCAQGLRLWRNSSSEVNNELFKGYRRGNTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFASIALARIPRSVNLVSNAYLQFLLGPGTQMLFEFVKEMPKPETPIKFDLASLLGPLFFTWVILQLFPIILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGLKFFTMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVVAYIGVFGTGLLAGFLFQFFVQGGWIIVMELYPGFALYRGLYEFSQSSFNGNALGTNGMRWKDLSNSTNGMKDVLIIMFVEWVLVLFLAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRQGSKVFVQMEKPDVNQELLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVKGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLSGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKKTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTSMDHEKHVENLVQQLSSNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00004 917 CDD ABC_subfamily_A 599 820 - -
Gabi1043g00004 917 Pfam ABC transporter 617 761 IPR003439 GO:0005524
Gabi1043g00004 917 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 595 832 IPR003439 GO:0005524
Gabi1043g00004 917 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 574 911 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00004 917 ProSitePatterns ABC transporters family signature. 734 748 IPR017871 GO:0005524|GO:0016887
Gabi1043g00004 917 FunFam ABC transporter A family member 7 584 860 - -
Gabi1043g00004 917 SMART AAA_5 625 808 IPR003593 GO:0016887
Gabi1043g00004 917 Gene3D - 587 863 IPR027417 -
Gabi1043g00004 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 823 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00004 Gabi-Chr1043 44392 53721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00004 604 854 Calmodulin-binding Proteins AT2G36910 24.046 1.37e-12 70.1