Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1043g00002 ATGGAAAATGGAAACACGCCCAATGAACCCGCTAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTCCAGAAACGAAATGTGAAGACAACGATTAGGCTAATCATGTACCCGTTCTTGCTGTGTCTGTTGCTGGTTCTAATCCAAAAGCTGCTAGATATTCAATTGGACAAGGCTAAAAACAAGTGTGGATGCATTTGTAGCAAGACACAAGGGGACAATTGTATTGAGAAAGTGTGTGGTATTCAGTATTCGGATTTGGATCAAGTTGGAACATGTCCAATTCCTAACCCTCCTGAATGGCCTCCTCTGTTGCAAGTGCCTGCTCCACAATATCGTGCTTCTTGCAGGAACAATGGCTCGTGTCCTGTTACTATGTTCTTCACCGGCACTAACCAATCTTTTGGAGAAATTTTATCTGGGAATATGATCCCAAGTACCTTTACCATAAATAATTCCGATGTTATGGGTAGTCTGGCAACAAATGTCGTGGGATCATCATCAAAGACACAGTACGACAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAAAGTCAGTGTACACAGAACTCTACATTCTCCATTCCTGTTCAGATATCAACCATTAGCAGCCAGCAAGAGGTAACATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTAAACAATGAGCTGTTTAAAGGTTATAGAAGGGGTAACACAGAGAAACAGATCGATGAGATAGCTGCAGGTTATGATTTTCTAAATTCAAATGGAAATAGATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACAGGCTTTGCATCTATTGCGTTGGCGCGTATTCCTCGTTCTGTAAATCTGGTATCTAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCCAAATGTTGTTTGAGTTTGTAAAGGAAATGCCGAAACCTGAGACCCCAATTAAATTTGATTTGGCTTCTCTACTGGGGCCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTATTATCCTGACATCGCTTGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCGTATTGGATGATTTCTTATGGTTATTTTCTTGCCTTATCTATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTAAAATTCTTCACAATGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTACAAATATCGCTGGCATTTCTGTTGGCTTCCCTGTTTTCAAATGTTAAGACAGCAACAGTAGTTGCATATATAGGTGTGTTTGGAACTGGGCTCTTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGATACATCGTTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATCTTCATTCAATGGGAATGCTTTGGGGACTAATGGAATGCGGTGGAAAGATCTAAGTAATAGCACGAATGGCATGAAAGATGTCTTAATTATCATGTTCGTGGAGTGGGTATTGGTGCTTTTTTTGGCATATTACATGGATCAAGTTTTGTCATCTGGAAGTGGGAAAAGTCCTCTCTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTAGGAAGCCTAGTATCCAAAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCAGATGTCAATCAAGAGAGAGAGAAGGTGGAACAGCTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACAACCTGAGAAAGGTCTATCCGGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAAAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAACATGATGATTGGTCTCACAAAGCCAACCTCTGGTACAGCATATGTTCAAGGTCTTGACATAAGAACTGATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAACCCTATCAGGAAGAGAGCACCTTCTCTTTTATGGCAGACTTAAAAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTCATGGAGGAGTTGCTGATAAAAAAACTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCATTGATTGGAGATCCTCGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAAGATCGTGCAATCATTCTCACCACACATTCAATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGCAGATGGTAGCATGCAGTGCATCGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATTACAACATCTATGGATCATGAAAAGCATGTGGAGAACTTGGTGCAACAGCTCTCCTCAAATGCTAACAAGATATACCATATCTCTGGTACGCAAAAGTTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCAAATGTATTCCTAGCTGTTGAAACTGCAAAGAGAAACTTCACGGTTTCTGCATGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAA 2808 0.4056 MENGNTPNEPASFWTQANALLRKNLTFQKRNVKTTIRLIMYPFLLCLLLVLIQKLLDIQLDKAKNKCGCICSKTQGDNCIEKVCGIQYSDLDQVGTCPIPNPPEWPPLLQVPAPQYRASCRNNGSCPVTMFFTGTNQSFGEILSGNMIPSTFTINNSDVMGSLATNVVGSSSKTQYDNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVQISTISSQQEVTCAQGLRLWRNSSSEVNNELFKGYRRGNTEKQIDEIAAGYDFLNSNGNRYNVSIWYNSTYKNDTGFASIALARIPRSVNLVSNAYLQFLLGPGTQMLFEFVKEMPKPETPIKFDLASLLGPLFFTWVILQLFPIILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSVIGLKFFTMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVVAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQSSFNGNALGTNGMRWKDLSNSTNGMKDVLIIMFVEWVLVLFLAYYMDQVLSSGSGKSPLFFLKGFQKKPSSSFRKPSIQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDNLRKVYPGRDGNPEKFAVKGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDIRTDMDGIYTSMGVCPQHDLLWETLSGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKKTGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFADGSMQCIGNPKELKARYGGTYVFTITTSMDHEKHVENLVQQLSSNANKIYHISGTQKFELPKEEVKIANVFLAVETAKRNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1043g00002 935 Gene3D - 605 881 IPR027417 -
Gabi1043g00002 935 CDD ABC_subfamily_A 617 838 - -
Gabi1043g00002 935 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524|GO:0016887
Gabi1043g00002 935 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 579 929 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi1043g00002 935 Pfam ABC-2 family transporter protein 255 544 IPR013525 GO:0016020|GO:0140359
Gabi1043g00002 935 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 850 IPR003439 GO:0005524
Gabi1043g00002 935 SMART AAA_5 643 826 IPR003593 GO:0016887
Gabi1043g00002 935 FunFam ABC transporter A family member 7 602 878 - -
Gabi1043g00002 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 841 IPR027417 -
Gabi1043g00002 935 Pfam ABC transporter 635 779 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1043g00002 Gabi-Chr1043 44392 53721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1043g00002 589 872 Calmodulin-binding Proteins AT2G36910 23.051 5.25e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1043g00002 - - gmx:100805474 1620.14