Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1041g00004 ATGACTAAGAAGAAAGAGAAAGCGAGAGAGAGTGAGAGCGATGAAGACGACATGTTCTTCTACCGTTACTGTGGTTCATCTTCATCAAACGCAACCCAAACCCAACACCAACACAAAATCAACGACACCAAAAACACCACCACCACCACCAACAACAACGGATCAGGACCGTTGGCGCCGTCAAAATCAACGGTCTACGTATCGAACCTCGATTACTCCCTAACAAACTCCGACATCCACACACTCTTCTCAACGTTCGGCCGCATCGCCCGCGTAACGGTTCTCAAGGACCGCCACACGCGCCTCAGCCGGGGCGTGGCGTTCGTCCAGTTCGTGTCGCGCGACGACGCACGAAGTGCCGCCGCCCAAATGCACCGCAAAATCCTCAACGGCCGGACGCTAACGGCTTCGATAGCAGCCGACAACGGCCGCGCCCCCGAGTTCATCCGGAAGCGCGTTTACCGGGACGACGGCCGTTGCTTCGAGTGCGGGGACAGTGGCCACCTGTCCTATGACTGCCCTAGGAATCTGTTAGGCCCGCGGGAGCGTCCCCCGCCTCCGAAATGCGGCGGCAGGAGAGGGTTCGGGTTGTGCCGAGGTAAGGAGGATGAGGAGGAGGATGACAAGGAGGACGATGGATCGGACGGCGGCGGCAGGGACAGGTTTGAGGATGATAATTGGGCTTCGGTTGTGGATAATGGGGCTGATGAGAGGCTGTTGGGGATGAATGAAAATGTTGTGGCCAATAAGAAGAAGAAGAAGGAGAAGAAAGCTGGGTACTTTAGTGATGAGAGTGATGATGATGATGATTGA 813 0.5584 MTKKKEKARESESDEDDMFFYRYCGSSSSNATQTQHQHKINDTKNTTTTTNNNGSGPLAPSKSTVYVSNLDYSLTNSDIHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVSRDDARSAAAQMHRKILNGRTLTASIAADNGRAPEFIRKRVYRDDGRCFECGDSGHLSYDCPRNLLGPRERPPPPKCGGRRGFGLCRGKEDEEEDDKEDDGSDGGGRDRFEDDNWASVVDNGADERLLGMNENVVANKKKKKEKKAGYFSDESDDDDD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1041g00004 270 SMART rrm1_1 64 137 IPR000504 GO:0003723
Gabi1041g00004 270 MobiDBLite consensus disorder prediction 28 61 - -
Gabi1041g00004 270 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Gabi1041g00004 270 ProSiteProfiles Zinc finger CCHC-type profile. 159 175 IPR001878 GO:0003676|GO:0008270
Gabi1041g00004 270 SUPERFAMILY RNA-binding domain, RBD 56 154 IPR035979 GO:0003676
Gabi1041g00004 270 SUPERFAMILY Retrovirus zinc finger-like domains 155 176 IPR036875 GO:0003676|GO:0008270
Gabi1041g00004 270 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 2 147 - -
Gabi1041g00004 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Gabi1041g00004 270 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Gabi1041g00004 270 Gene3D - 152 186 - -
Gabi1041g00004 270 MobiDBLite consensus disorder prediction 247 263 - -
Gabi1041g00004 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Gabi1041g00004 270 Gene3D - 24 151 IPR012677 -
Gabi1041g00004 270 MobiDBLite consensus disorder prediction 175 270 - -
Gabi1041g00004 270 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 10 269 IPR044598 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1041g00004 Gabi-Chr1041 60884 67471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1041g00004 62 125 Eukaryotic Initiation Factors Gene Family AT3G11400 40.625 3.39e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1041g00004 K13154 - gmx:100814914 276.174