Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1041g00003 ATGGAAGAAGGGTTAGGTCAAAACTCAGTTCCTCCTTCAGGTTCCATTGACAAGTCTAGGATTCTGGATATTAAACCTCTTAGGTGTTTGATTCCTGTTTTCCCAATATCTCCTCAACCTCCACCTTCTGGCCAATATCCTTCTGGGTATTCTCCTTTTTTCCCATTTGGTGCACCTCAGACAGCAAGGGATGGTGCTATACCAGCTCCAATAAGGGCATTTAGGAGCCCCCTAGGGGCAGGAGACACAAGTTCAACAATGGAGGGGTTCAATGATCATGATATTTCTGGTAACAAAAAACATGCAGCATCGCGTTTGAACCGCTACAAATCATCCATAAAGAAATATAAGACAAGTCAAGAGTCACATATTGACTTAAGTGCTTTAGTTAATATTAGCCCCGCGCAAAGAGAAGATGGTATCCGTGAAGTGGTTGATATTACACTCATGACATTTGATGCACTTAGAAGAAGACTCTGCCAACTTGAAGATGCCAAGGAATTGAGCACGGGTTCAATCAAGCGTGCAGATTTAAGAGCTTGCAAGATTTTGATGACGAAAGGAATTCGGACAAACATGAGGAAGAGAATAGGATTTGTTCCTGGGGTTGAGATTGGGGACATTTTCTTTTTCCGAACAGAATTATGTATTGTGGGTTTGCATGCTCCCAGCATGGGTGGGATTGACTCCTTGCATATCAGGGGTGAGTCTGAGGAGGAAACTATGGTGGCTATAAGCATAGTTTCATCAGGAGAATATGACGATGATGCGGAGGATAATGATGTTATAATTTATACTGGTCAGGGTGGGAACTCTAGCTTCAACAAGAAAGATAAGGTCGTGATGGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAATAGTTCACGACTGCACAATGAAGTAAGAGTCATCCGCGGCATGAGAGATGCTGTGAATCCGAATGCAAAAATCTATGTCTATGATGGTCTGTATCAAATCCAAAATTCATGGGTAGAAAGAGCAAAAAATGGCGGTGATGTATTTAAGTATAAGTTGGTAAGAATGCCTGGACAGCCTAGTGCCTTTTCCGTTTGGAAATCGGTTCAGAAGTGGAAGTCTGGCTCCCCTTCAAGGACTGGACTTATTCTTGCGGACCTTTCCGCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATAATGTGAAGGCGCCTGCTTATTTCACTTATTTCCATTCTCTTAGACATCCAAAATCATTCAGTTTAACGCAACCCTCCAATGGGTGCAACTGTGCTAAAGCATGTGTACCTGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATACACTGGCAATGGCATTCTGGTGAGTCGGAAGCAAATGGTTCATGAATGCGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACTGGTTTAAAGCTCTACATGGAAGTATTCAAAACAAAGGATAGAGGGTGGGGTCTTCGATCACTGGATGCTATTCGTGCTGGAACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGACAAGGTAAGTCATCATGTGAAGGAAAGATATAATGATGAGTATGTTTTCGATACAACCTGTATTTATGATCCATTCAAGTGGAATTATGAGCCTAAGTTGCTGGAAGAAGTGAGTACAAATGACACTAGTGAGGATTATGCTATACCGTATCCTCTAATTATAAGTGCCAAGAATGTTGGAAATGTAGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCTTATATGAAGAAAACAATCAATCCTTCCTCCATGTTGCATTTTTTGCACTCAGACACATTCCGCCGATGACAGAGTTAACTTATGATTATGGATTTGCTCGATCTGATCATGCTGAGGGTAGCAGTGCACCCAAAGGGAGAAACAAATGCTTATGCGGATCATCAAAATGCCATGGATCTTTTGGTTGA 2001 0.4188 MEEGLGQNSVPPSGSIDKSRILDIKPLRCLIPVFPISPQPPPSGQYPSGYSPFFPFGAPQTARDGAIPAPIRAFRSPLGAGDTSSTMEGFNDHDISGNKKHAASRLNRYKSSIKKYKTSQESHIDLSALVNISPAQREDGIREVVDITLMTFDALRRRLCQLEDAKELSTGSIKRADLRACKILMTKGIRTNMRKRIGFVPGVEIGDIFFFRTELCIVGLHAPSMGGIDSLHIRGESEEETMVAISIVSSGEYDDDAEDNDVIIYTGQGGNSSFNKKDKVVMDQKLHRGNLALDNSSRLHNEVRVIRGMRDAVNPNAKIYVYDGLYQIQNSWVERAKNGGDVFKYKLVRMPGQPSAFSVWKSVQKWKSGSPSRTGLILADLSAGAESIPVSLVNDVDNVKAPAYFTYFHSLRHPKSFSLTQPSNGCNCAKACVPGDLNCSCIRRNEGDFPYTGNGILVSRKQMVHECGPTCQCFPNCKNRVSQTGLKLYMEVFKTKDRGWGLRSLDAIRAGTFICEYAGEVIDRDKVSHHVKERYNDEYVFDTTCIYDPFKWNYEPKLLEEVSTNDTSEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMTELTYDYGFARSDHAEGSSAPKGRNKCLCGSSKCHGSFG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1041g00003 666 SMART G9a_1 193 353 IPR003105 -
Gabi1041g00003 666 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 181 368 - -
Gabi1041g00003 666 Pfam SET domain 499 635 IPR001214 GO:0005515
Gabi1041g00003 666 Pfam SAD/SRA domain 197 353 IPR003105 -
Gabi1041g00003 666 Pfam Pre-SET motif 382 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1041g00003 666 ProSiteProfiles SET domain profile. 488 635 IPR001214 GO:0005515
Gabi1041g00003 666 Gene3D SET domain 370 665 IPR046341 -
Gabi1041g00003 666 ProSiteProfiles Post-SET domain profile. 650 666 IPR003616 -
Gabi1041g00003 666 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 666 IPR025794 GO:0016571
Gabi1041g00003 666 ProSiteProfiles Pre-SET domain profile. 424 485 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1041g00003 666 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 107 660 - -
Gabi1041g00003 666 SMART preset_2 378 472 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1041g00003 666 SUPERFAMILY PUA domain-like 181 370 IPR015947 -
Gabi1041g00003 666 Gene3D - 180 368 IPR036987 -
Gabi1041g00003 666 MobiDBLite consensus disorder prediction 79 98 - -
Gabi1041g00003 666 SUPERFAMILY SET domain 387 663 IPR046341 -
Gabi1041g00003 666 ProSiteProfiles YDG domain profile. 198 349 IPR003105 -
Gabi1041g00003 666 SMART set_7 488 641 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1041g00003 Gabi-Chr1041 33715 37504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1041g00003 62 666 Su(var)3-9 homologs AT5G04940 57.591 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1041g00003 SAD_SRA 4.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1041g00003 K24405 - gmx:100812173 1076.23