Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1039g00012 ATGGCTATCGCACCGGAGGAGAATTGCTCCGCCAAGCCTACCAAGCAGGGAGAGGGTCTCCGCCAGTACTATTCTCTTCACATCCATGAGCTTCAGCTCCTCCTCCGCCAAAAGACCCACAACCTCAATCGTCTCGAGGCTCAGCGAAACGAGCTTAATTCTAGGGTGAGGATGCTCCGAGAAGAACTGCAGCTTCTTCAGGAGCCTGGCTCATATGTCGGTGAAGTTGTCAAAGTTATGGGCAAGAACAAAGTCTTGGTCAAGGTCCATCCAGAAGGAAAATATGTTGTCGATATTGATAAAAATATTGACATTACAAAGATTACTCCGTCAACTAGAGTTGCCCTCCGCAATGACAGTTATGTTCTTCATTTAGTTCTGCCAAGCAAAGTTGATCCGCTGGTCAACCTGATGAAAGTTGAAAAGGTTCCCGATTCTACATATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATAAAAGAGGTCATTGAGCTACCAATTAAACATCCTGAGCTGTTTGAGAGTCTAGGAATAGCACAACCAAAGGGTGTCCTGCTCTATGGCCCCCCTGGTACAGGAAAAACTTTGTTGGCTCGGGCAGTGGCACATCATACTGATTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGATGAAATTGACAGTATTGGATCAGCCCGTATGGAATCTGGAAGTGGTAATGGTGATAGTGAGGTACAGCGCACTATGCTGGAACTTTTGAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTCGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCGCGGCTAGATATTCTGAAGATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAGCTTAAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGGAGGGTACATGTGACACAGGAGGATTTTGAGATGGCTGTGGCCAAGAACTGA 1176 0.4507 MAIAPEENCSAKPTKQGEGLRQYYSLHIHELQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1039g00012 391 CDD RecA-like_PAN_like 147 318 - -
Gabi1039g00012 391 Coils Coil 28 62 - -
Gabi1039g00012 391 FunFam 26S protease regulatory subunit 8 34 138 - -
Gabi1039g00012 391 Pfam AAA+ lid domain 343 385 IPR041569 -
Gabi1039g00012 391 SMART AAA_5 182 322 IPR003593 GO:0016887
Gabi1039g00012 391 FunFam 26S protease regulatory subunit 8 325 391 - -
Gabi1039g00012 391 ProSitePatterns AAA-protein family signature. 290 308 IPR003960 GO:0005524|GO:0016887
Gabi1039g00012 391 Gene3D - 139 320 IPR027417 -
Gabi1039g00012 391 Pfam ATPase family associated with various cellular activities (AAA) 186 319 IPR003959 GO:0005524|GO:0016887
Gabi1039g00012 391 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 390 - -
Gabi1039g00012 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 389 IPR027417 -
Gabi1039g00012 391 Gene3D - 325 391 - -
Gabi1039g00012 391 Gene3D - 34 138 IPR012340 -
Gabi1039g00012 391 FunFam 26S protease regulatory subunit 8 139 320 - -
Gabi1039g00012 391 Pfam Proteasomal ATPase OB C-terminal domain 73 128 IPR032501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1039g00012 Gabi-Chr1039 123814 132613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1039g00012 129 374 Calmodulin-binding Proteins AT3G56690 41.870 8.85e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1039g00012 K03066 - gmx:100776268 731.095