LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1039g00004	ATGCTATCTCAGTCGTTTAATATGATTGCAACAATAATAATACTAGTTATAGCACAAATAACTTCAAGAGTGAATTCGTTTTCAGAAGCTGATAAGATAAGCACTTTGCCTGGGCAGCCACAAGTCAAATTCCAGCAATATGCTGGTTACATTACAGTGGAGGAGAAGCAGCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTGAAGTAGAACCAGCTTCTAAGCCATTAGTTCTCTGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCCAATGAAAATGGTCTTGTGAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTATTCTGCCAATAAATCTTTCTATGACTTTGTGACCGATGAAATGACAGCAAAGGATAATCTTGTTTTCCTACAGAACTGGTTCTCTAGATTCCCAGAGTACAAAAACAATGACTTCTTTATCACAGGGGAGAGCTATGCAGGTCATTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAGACCAAGTTCAATCTCAAAGGGATAGCAATAGGAAACCCACTACTGGAATTTAACACTGATTTCAACTCCAGAGCTGAATTTTTCTGGTCCCATGGACTGATATCAGATTCAACTTTCGAAGTGTTTACTAAAGTATGCAACTATTCCCAAATTAGGAGACAATCTCAAACTGGGACACTTAGCCCCGTTTGTGCAGGAGTAAATAAACTAGTGTCAACAGAGGTTAGCAGATATATTGATACATATGATGTTACTCTTGATGTGTGTCTGTTATCAGCAAATCAACAGGCTTTTGTGCTGACTCAACTGCAAGAGGGAGAGAAGATAGATGTTTGTGTCGAAGACGAAACATTCACATACTTGAACAAGAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTTGTAGGGATCACCACATGGTCAACTTGCAGCGATGTTCTCAAATATGACATGCAGAATCTAGAGATTCCAACCATTTCAATTCTAGGGGCACTTGTTAAGTCAGGTATCAGGGTTCTGGTATACAGTGGAGACCAAGATTCAGTCATCCCATTAATTGGGACAAGATCCCTGGTAAATGATTTAGCCAAGGAGTTTGGACTGAATACAACAGTGTCATATAGAGCCTGGTTTCAAGCAAGACAGGTAGCTGGATGGACACAAGTATATGGCAACATGTTATCATTTGCCACCATAAGAGGAGCAGCTCATGAAGCTCCGTTTTCACAACCAGAGAGGTCACTAGTGCTGCTAAAAGCATTTTTGGAAGGAAAGCCACTTCCAGAACTATTGTCTTAA	1383	0.4056	MLSQSFNMIATIIILVIAQITSRVNSFSEADKISTLPGQPQVKFQQYAGYITVEEKQQRALFYYFVEAEVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPNENGLVKNDYSWNKEANMLYLESPAGVGFSYSANKSFYDFVTDEMTAKDNLVFLQNWFSRFPEYKNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLKGIAIGNPLLEFNTDFNSRAEFFWSHGLISDSTFEVFTKVCNYSQIRRQSQTGTLSPVCAGVNKLVSTEVSRYIDTYDVTLDVCLLSANQQAFVLTQLQEGEKIDVCVEDETFTYLNKKEVQEALHAKLVGITTWSTCSDVLKYDMQNLEIPTISILGALVKSGIRVLVYSGDQDSVIPLIGTRSLVNDLAKEFGLNTTVSYRAWFQARQVAGWTQVYGNMLSFATIRGAAHEAPFSQPERSLVLLKAFLEGKPLPELLS	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1039g00004	460	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	32	439	IPR001563	GO:0004185\|GO:0006508
	Gabi1039g00004	460	Pfam	Serine carboxypeptidase	37	452	IPR001563	GO:0004185\|GO:0006508
	Gabi1039g00004	460	FunFam	Carboxypeptidase	353	452	-	-
	Gabi1039g00004	460	ProSitePatterns	Serine carboxypeptidases, serine active site.	174	181	IPR018202	GO:0004185
	Gabi1039g00004	460	Gene3D	-	307	342	-	-
	Gabi1039g00004	460	Gene3D	alpha/beta hydrolase	27	285	IPR029058	-
	Gabi1039g00004	460	SUPERFAMILY	alpha/beta-Hydrolases	35	456	IPR029058	-
	Gabi1039g00004	460	Gene3D	-	354	452	-	-
	Gabi1039g00004	460	FunFam	Carboxypeptidase	26	456	-	-
	Gabi1039g00004	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	160	185	IPR001563	GO:0004185\|GO:0006508
	Gabi1039g00004	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	111	123	IPR001563	GO:0004185\|GO:0006508
	Gabi1039g00004	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	422	435	IPR001563	GO:0004185\|GO:0006508
	Gabi1039g00004	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	124	134	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1039g00004	Gabi-Chr1039	83961	86911	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1039g00004	315	455	Calmodulin-binding Proteins	AT2G22960	29.787	2.59e-17	78.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1039g00004	K16297		-	gmx:100805028	813.142