Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi102g00154 ATGGAGAAGAAGAACGGTATTGTCTGCGAGATCTGTAATAAGAGCTTCTCCAGCGGAAAAGCCATAGGAGGCCATATGAGATCTCACTTAGCCATATACCCAATTCCTCCAAAGCTCGAAACAGAGAATCAAGCACTGGATAACGCGGCCGAGTTAGCCCACTATCCAATTCAATCTGCTTCTGCACTGACTTCCCATCCCAAAAAGAAACCAACACAGAATTCCCGATCTTTGAAACGCGACTCCTTACCCTCCTTGGTAAACTCAGACAAAGAAAATGAATCCGGGTCTTACCTAAAAAACCCAACCCGCAAAAGATCCAAATGTCACCGCAAATTTACTACAGCGGCTGCGGCAGAAGATGAACAAAAGAAAACGATTTCAATACCTGAAACTCTTCGTGCAGTAGAAGCCGCTAGATCTCTATTAATGCTTTCCAAGGATAAATGGCCAGAAAGCGAAGAAATCAAGTCTCAAAAAATGAAGGAAACCAACATAATAGAGGCAAAAGATGGTGAAAACGGTAGAGATGACTTGCTCGTTCAAACTCGCTCTCGATCTAGGTTCAAGTGCGAGTGGTGTGGAAAAATGTTTCGAACTTATCAAGCACTAGGTGGGCACAAAGCAAGCCATAAGAAAATTAAGAATCTATGCCAAGAAGGTGGTGACATTGAAGATGAAAAAGGTGGCAACAATAGTGATGTTGTGGATGAAAAAGTGTTTGAGTGCACATACTGCTCCAAAGTGTTTAAGTCTGCTCAAGCACTTGGTGGTCACAAGAAGGTACACTTCTCCCATACTATGGTTACCAATGCTCATGCCACTGCTAATGAATTTGGTGGCAAACTGGTAGTAGATCTTAATTTCCCAGCTCCCAAAGAAGATGAAAAGGTTAGTCTTATCAAATTTTCATCCATGTGCAGCGAAGAATGA 933 0.4244 MEKKNGIVCEICNKSFSSGKAIGGHMRSHLAIYPIPPKLETENQALDNAAELAHYPIQSASALTSHPKKKPTQNSRSLKRDSLPSLVNSDKENESGSYLKNPTRKRSKCHRKFTTAAAAEDEQKKTISIPETLRAVEAARSLLMLSKDKWPESEEIKSQKMKETNIIEAKDGENGRDDLLVQTRSRSRFKCEWCGKMFRTYQALGGHKASHKKIKNLCQEGGDIEDEKGGNNSDVVDEKVFECTYCSKVFKSAQALGGHKKVHFSHTMVTNAHATANEFGGKLVVDLNFPAPKEDEKVSLIKFSSMCSEE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi102g00154 310 SMART c2h2final6 241 263 IPR013087 -
Gabi102g00154 310 SMART c2h2final6 7 29 IPR013087 -
Gabi102g00154 310 SMART c2h2final6 189 211 IPR013087 -
Gabi102g00154 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Gabi102g00154 310 Gene3D Classic Zinc Finger 186 263 - -
Gabi102g00154 310 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Gabi102g00154 310 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Gabi102g00154 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Gabi102g00154 310 Pfam C2H2-type zinc finger 240 263 - -
Gabi102g00154 310 Pfam C2H2-type zinc finger 8 31 - -
Gabi102g00154 310 Pfam C2H2-type zinc finger 188 213 - -
Gabi102g00154 310 SUPERFAMILY beta-beta-alpha zinc fingers 189 263 IPR036236 -
Gabi102g00154 310 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Gabi102g00154 310 MobiDBLite consensus disorder prediction 59 109 - -
Gabi102g00154 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Gabi102g00154 310 MobiDBLite consensus disorder prediction 59 102 - -
Gabi102g00154 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 7 300 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi102g00154 Gabi-Chr102 1382081 1383013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi102g00154 9 301 C2H2 Transcription Factor Family AT3G60580 31.922 8.48e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi102g00154 zf-C2H2_6 1.1e-09 CL0361