Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi102g00090 ATGGAGAAGTACCTCAGAGATAACTTTGACGTCCAGCCCAAGCGTCCCTCTGAGGCCGCCCTTCGCCGATGGAGATCCGCCGTCTCCGTCGTCAAGAACCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGTGCCGACGCCGAACAAAAGCGCCAGAAGCTCCAGGAAAAGATACGAGTGGCTCTCTATGTGCAAAAAGCAGCGTTAAATTTTATTAACGGTATTTACATTTACCGTGGTGGTCACATGCTATCCAAAGAGATTCAGGAAGCAGGTTTTGGAATTGATCCTGATGAATTAGCTTCCATTGTTCGATCCCATGACACCAAATGTTTAGAACATCATGAAGGAATCGAAGGATTAGCAAAAGCAGTTTGTGTGTCATTGCAATCAGGCATTAATTCATGTGATGTTCCTCTTAGACAAAACATCTATGGTGTTAACCGACATGCAGAGAAGCCTTCTAGAAGTTTTTGGATGTTTGTTTGGGATGCAATGCAAGACTTAACTTTAATAATCCTTATTGTATGTGCTGTTGTTTCAATTGGTGTTGGAATCTCAACCGAAGGTTTGCCTAAAGGTATGTACGATGGAGTTGGAATCATACTATGTATTATTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGACAAAGAAAAGAAAAATGTCAGCATTCAAGTTACAAGAGAAGGTACAAGACAAAAGGTTTCAATTTATGATCTTGTGGTAGGAGATGTAATCCATCTCTCAATTGGAGATGTGGTTCCTGCAGATGGGTTATTCATATCTGGTTTTAGCTTATTGATTGATGAATCAAGTTTATCAGGTGAGAGTGAGGCTGTGAATGTTGATCAACAGAAGCCTTTTCTTCTAGCGGGAACCACAGTTCAAGATGGTTCTGCTAAGATGCTAGTGACTTGTGTTGGTATGAGGACTGAATGGGGAAGATTGATGGATACTCTGAACGAAGGTGGAGATGATGAGACACCACTTCAGGTTAAACTAAATGGGGTTGCAACCATTATTGGGAAGATAGGTTTGGGTTTTGCACTGTTGACATTCCTGGTTCTGACTGGAAGGTTTTTGTTGGAGAAAATAGAACAACATGAGATCACAGAATGGGGTCTGAATGATGCTTCAAAGCTTCTTAATTTCTTTGCTACTGCTGTCATTATAATAGTTGTGGCTGTTCCTGAGGGTCTTCCTTTGGCAGTGACACTAAGCCTTGCATTTGCAATGAAGAAACTAATGAATGATAAGGCACTAGTAAGGCACCTCTCTGCATGCGAGACAATGGGTTCTGCTGGTTGTATTTGCACAGATAAAACAGGAACTTTGACAACAAATCACATGGTTGTGGACAAAATATGGATTTGTGAACAAACAAAGGCAATTAAAAGCGGCACCAGTGAAAATGTTTTGAAGCCCTCAATCTCTGAACAGATATTTGATCTTCTTTTGCAATCCATATTCCAGAATACTGGCTCAGAGATAGTTAAAGGGCAAGATGGAAAGAACAAAATCATGGGTACTCCTACAGAGTCAGCATTGCTGGAATTTGGCTTGCTTTTGGGTGGTGATTCTAAGTATTATAATGAGAAATATAAGATAGTGAAGATTGAGCCTTTCAACTCAGTCAGAAAAAAGATGTCAGTGCTTGTGGCTCTTCCTGATGGCAACAACAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAAATAGTAGTGAAAATGTGTGACAAGGTTGTTAATGCAGACGGCAAAGTCATTGATATGAACGAACAACAAAGAAATAGCATCACGGAAGTTATCAATGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCATTGCCTTCAAGGATATTGAAGGATCCTCTCAAGAGGGACCAGATTTTAGGAACAAGTCCCAGCAAGAAATGGAGGAGATAATACCAAAAATACAGGTAATGGCTAGATCCTTGCCTCTTGACAAGCACACCTTAGTGACCCATTTGAGGAATGACTTTAACGAAGTTGTGGCAGTAACGGGCGATGGGACCAATGATGCTCCAGCTTTGCATGAGGCTGATATTGGGCTTGCTATGGGTATTGCAGGGACAGAGGTTGCAAAAGAGAATGCTGATGTGATTGTGATGGATGATAACTTCACAACCATAGTGAATGTTATAAGATGGGGCCGTTCTGTTTATATTAATATACAAAAGTTTGTCCAGTTCCAGTTAACAGTGAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCATGTGTGTCAGGCTCAGCTCCTCTAACTGCAGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTAGGCGCATTGGCACTGGCCACAGAACCTCCCCATGATGGACTGATGAAAAGACCACCTATTGGAAGAAACGCCAAATTCATCACTGGGGTCATGTGGAGGAACATAACTGGTCAGAGCATCTATCAAATTATTGTCCTTTTGATTCTCAAATTTCGTGGGAAACAGATTCTCAAGCTCAGTGGACCTGATTCTACATCAGTTCTGAATACGGTCATATTCAACACTTTTGTGTTTTGTCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGATTAATGTCTTACGAGGAATGTTCAGCAGCTGGATTTTCCTGATGGTCATGACCTTAACAATATGCTTTCAAGTAATAATAGTTCAGTTTCTTGGTGCTTTTGCTCAAACAGTACCACTGAGCCGTGAGTTGTGGTTAACCAGTTGCATGATTGGAGCATTGAGTTTACTCGTAGCAGTTGTCCTAAAGTGCATTCCTGTTCCTGATAGTAATTACATCGCAACTCATCATGATGGTTACGAGCAGCTACCAAGTGGACCAGAACTTGCATGA 2919 0.4159 MEKYLRDNFDVQPKRPSEAALRRWRSAVSVVKNPRRRFRMVANLAQRADAEQKRQKLQEKIRVALYVQKAALNFINGIYIYRGGHMLSKEIQEAGFGIDPDELASIVRSHDTKCLEHHEGIEGLAKAVCVSLQSGINSCDVPLRQNIYGVNRHAEKPSRSFWMFVWDAMQDLTLIILIVCAVVSIGVGISTEGLPKGMYDGVGIILCIILVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTREGTRQKVSIYDLVVGDVIHLSIGDVVPADGLFISGFSLLIDESSLSGESEAVNVDQQKPFLLAGTTVQDGSAKMLVTCVGMRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLLEKIEQHEITEWGLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICEQTKAIKSGTSENVLKPSISEQIFDLLLQSIFQNTGSEIVKGQDGKNKIMGTPTESALLEFGLLLGGDSKYYNEKYKIVKIEPFNSVRKKMSVLVALPDGNNKSRAFCKGASEIVVKMCDKVVNADGKVIDMNEQQRNSITEVINGFASEALRTLCIAFKDIEGSSQEGPDFRNKSQQEMEEIIPKIQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVIRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITGVMWRNITGQSIYQIIVLLILKFRGKQILKLSGPDSTSVLNTVIFNTFVFCQVFNEINSRDMEKINVLRGMFSSWIFLMVMTLTICFQVIIVQFLGAFAQTVPLSRELWLTSCMIGALSLLVAVVLKCIPVPDSNYIATHHDGYEQLPSGPELA 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi102g00090 972 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Gabi102g00090 972 Gene3D - 16 76 - -
Gabi102g00090 972 Gene3D - 212 332 - -
Gabi102g00090 972 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Gabi102g00090 972 PRINTS P-type cation-transporting ATPase superfamily signature 712 724 - -
Gabi102g00090 972 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Gabi102g00090 972 PRINTS P-type cation-transporting ATPase superfamily signature 688 707 - -
Gabi102g00090 972 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Gabi102g00090 972 PANTHER CATION TRANSPORTING ATPASE 82 635 - -
Gabi102g00090 972 Coils Coil 40 60 - -
Gabi102g00090 972 Gene3D - 333 465 - -
Gabi102g00090 972 SUPERFAMILY HAD-like 598 737 IPR036412 -
Gabi102g00090 972 Pfam Cation transporter/ATPase, N-terminus 116 184 IPR004014 -
Gabi102g00090 972 Pfam Cation transporting ATPase, C-terminus 773 946 IPR006068 -
Gabi102g00090 972 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 948 IPR023298 -
Gabi102g00090 972 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Gabi102g00090 972 NCBIfam HAD-IC family P-type ATPase 392 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi102g00090 972 NCBIfam HAD-IC family P-type ATPase 653 776 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi102g00090 972 PRINTS Sodium/potassium-transporting ATPase signature 578 596 - -
Gabi102g00090 972 PRINTS Sodium/potassium-transporting ATPase signature 445 466 - -
Gabi102g00090 972 PRINTS Sodium/potassium-transporting ATPase signature 202 222 - -
Gabi102g00090 972 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 635 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi102g00090 972 FunFam Calcium-transporting ATPase 16 76 - -
Gabi102g00090 972 Pfam E1-E2 ATPase 237 430 - -
Gabi102g00090 972 FunFam Calcium-transporting ATPase 462 649 - -
Gabi102g00090 972 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 638 IPR023299 GO:0000166
Gabi102g00090 972 Pfam Cation transport ATPase (P-type) 514 594 - -
Gabi102g00090 972 Gene3D - 701 951 - -
Gabi102g00090 972 Gene3D - 466 658 IPR023299 GO:0000166
Gabi102g00090 972 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Gabi102g00090 972 FunFam Calcium-transporting ATPase 705 951 - -
Gabi102g00090 972 FunFam Calcium-transporting ATPase 214 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi102g00090 Gabi-Chr102 758578 763940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi102g00090 636 969 Primary Pumps ATPases AT3G57330 76.647 6.16e-173 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi102g00090 K01537 - gmx:100805063 1087.02