Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi102g00045 ATGGCTGAGAGCGTGGTTCCCTTCCTTCTAGAAAAATTGTCCCAACTGCTGGAACACGAAGCCAAGTTGCTCTTGGGCGTGGAAGGCAAAATCAAATCCCTTCACACCGAGCTCCAATTTATAAATGCTTACCTCAAAACCTTCGATGGGAATAAGAAGAGCAAGACGGAGATAGAACAAGAATTTGTTAATCAAATCAGAGATGTCTCCCACGAAGCTGAGGATGTCATTGACACGTACATTGCCAACATCACCATTCACAAAAGGAGAAGCATGCTGACTAGGATGCTCTGCGGCCTTGGCAACGCAAAGTTGCTCCACGAAGTAGCCGAGAAAATAGAGAATATAACAACCACTCTCAACAACATAAGCGACAACAAGATCAAATACAACTTTGAAAAAAGTGATGATCAATCCACATTAAGAGAAGAAGAGGAGAGGGCGCAGTTAGTGCACAAGCGAAGGAGAGATGTGGAAGAGGAAGATGTAGTTGGCTTTGTCCATGCCTCCGAGGTAATCATCAAGCGCCTCATGGAAGAAGGGGGTTCACGGCGTAACATCGTGCCGATCATCGGCATGGGTGGATTGGGCAAGACCACACTTGCTCGAAAGGTCTACAAAAGCAACGAGGTGAAACAATACTTCGATTGCAGTGTGTGGGTTTATGTGTCAAACGAGTACAGAGCTAAGGAGCTTTTGGTTGGTCTTTTCAAGCAGTTGACGTTGAACCCTGAATATGAACGTAGAAGCAACAAGAAGGGTAAGAAACACAAGGAAATAGATAAGCCTCAAGACTTTTCTATATTGAGCACTGATGAGCTGAAGATAATAGTGCGGGAATGCTTGAAGGGGAAAAAGTATCTACTTGTGCTCGATGACTTGTGGAAAACCCAAGATTGGGACGAGGTACAAGATGCTTTTCCCGATGAAAACACAGGCAGCAAAATATTGATTACTAGTCGTTTGAAAGAGGTGGCCTCGCATACCAGCCAAGATCCTCCACACGAACTTCAATTTCTCAATGATGAAGAAAGCTGGGAGCTCTTCTCCAAGAAAGTGTTTCGGGGAGAAGAGTACCCTACTGATCTAGAGTCTCTAGGTAAACAAATAGTTCAAAGTTGTGGCGGTTTGCCTCTCTCCATTGTCGTATTGGCAGGGCTTCTAGCAAACAAGGAAAAGTCTCACAGAGAATGGTCAAAAGTGGTGGGCCATGTCAATTGGTATCTCACTCGAGATGAGACCCAAGTCAAGGATATAGTACTCAAACTCAGCTACGATAACTTGCCAACAAGATTGAAGACACGCTTTCTATATCTTGGGATATTCCCTGAAGACTTTGAAATCCATGTTAGGCCACTGTTGGAAAAGTGGGTTGCTGAAGGATTTATAAGAGAAACGGGGACTAGAGATCCAGATGATGTTGCCGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTCCAAGTAGCACGAGTGAAGAGTAGTGGAGGTGTGAAAACATGTCGCATCCACGATCTTCTGCGGGATCTCTGCATATCTGAGAGCAAAAAGGACAAGGTTTTTGAAGTTTGCACCGATTATAACATTGTAATCCCGACAAAACCTCGAAGACTGGCCATCCATTGTAGCATGTCTCGCTACATTTCTTCAAGCAACAATGACCAGTCATGTGTCCGTTCTTTGTTCTGCTTTGACCGAGATCTCCAACTTACTCGCGGCCTATGTGAATGGCTTTTCAAAAGCTTCAAATTGGTTCAGGTGTTAGAGCTTGCTGGGCGCTGCCGAATGAAGATCCCTTCCAACTTGGGGAACTTTATTCACTTAAGGTTCCCACAACTGAAGGTGTTCCAGATGAGATATTTGTATGTCCAAAACTGGAAATTAGCCAATGGTGCAATGCCATGCCTTCAAAACCTGGTCATTGAAAGCTGTCCTGAGTTGAATGATCTCCCAAATGAACTGTGGTCTTTGACTGCCTTGAGAAAAGTGCAAGTTCGGGAACCCTCAGAAGCAATGGCTCACATGCTACGTAATTTGAAAATGAAGGGTGGGTGTGAACTCATAGTGGAGGGATGA 2079 0.4454 MAESVVPFLLEKLSQLLEHEAKLLLGVEGKIKSLHTELQFINAYLKTFDGNKKSKTEIEQEFVNQIRDVSHEAEDVIDTYIANITIHKRRSMLTRMLCGLGNAKLLHEVAEKIENITTTLNNISDNKIKYNFEKSDDQSTLREEEERAQLVHKRRRDVEEEDVVGFVHASEVIIKRLMEEGGSRRNIVPIIGMGGLGKTTLARKVYKSNEVKQYFDCSVWVYVSNEYRAKELLVGLFKQLTLNPEYERRSNKKGKKHKEIDKPQDFSILSTDELKIIVRECLKGKKYLLVLDDLWKTQDWDEVQDAFPDENTGSKILITSRLKEVASHTSQDPPHELQFLNDEESWELFSKKVFRGEEYPTDLESLGKQIVQSCGGLPLSIVVLAGLLANKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPTRLKTRFLYLGIFPEDFEIHVRPLLEKWVAEGFIRETGTRDPDDVAEDYLYELIDRSLVQVARVKSSGGVKTCRIHDLLRDLCISESKKDKVFEVCTDYNIVIPTKPRRLAIHCSMSRYISSSNNDQSCVRSLFCFDRDLQLTRGLCEWLFKSFKLVQVLELAGRCRMKIPSNLGNFIHLRFPQLKVFQMRYLYVQNWKLANGAMPCLQNLVIESCPELNDLPNELWSLTALRKVQVREPSEAMAHMLRNLKMKGGCELIVEG 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi102g00045 692 PANTHER DISEASE RESISTANCE PROTEIN RP 34 680 IPR044974 GO:0006952
Gabi102g00045 692 Gene3D - 5 116 - -
Gabi102g00045 692 FunFam Probable disease resistance protein At5g66910 339 426 - -
Gabi102g00045 692 Coils Coil 141 161 - -
Gabi102g00045 692 Pfam NB-ARC domain 171 427 IPR002182 GO:0043531
Gabi102g00045 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 439 IPR027417 -
Gabi102g00045 692 SUPERFAMILY L domain-like 495 663 - -
Gabi102g00045 692 Gene3D - 144 333 IPR027417 -
Gabi102g00045 692 Gene3D - 339 424 IPR042197 -
Gabi102g00045 692 Pfam Rx N-terminal domain 5 89 IPR041118 -
Gabi102g00045 692 Gene3D Ribonuclease Inhibitor 513 684 IPR032675 -
Gabi102g00045 692 FunFam Probable disease resistance protein At1g61300 145 334 - -
Gabi102g00045 692 PRINTS Disease resistance protein signature 632 648 - -
Gabi102g00045 692 PRINTS Disease resistance protein signature 374 388 - -
Gabi102g00045 692 PRINTS Disease resistance protein signature 187 202 - -
Gabi102g00045 692 CDD RX-CC_like 2 125 IPR038005 -
Gabi102g00045 692 Gene3D - 425 512 IPR036388 -
Gabi102g00045 692 FunFam Probable disease resistance protein At1g63360 425 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi102g00045 Gabi-Chr102 436762 439533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi102g00045 188 511 WRKY Transcription Factor Family AT5G45050 24.695 7.55e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi102g00045 - - aprc:113849989 891.338