Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi102g00040 ATGATTCAGAACACTGATATGGGACTCGAATCGGGGACTTGTAATGTATGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAATCGAGCTTTCATGGGCTCAAAGGCTGAAGAATTCTCTGATGAAAACTGTCGCTTAGGGGAGGCTAATCAGCACTCTATGGGTGAAACCAGTAACATGCATAGTGTTAATTCCAGTCATGATTCTCTATCTGAAAATGCCGAGAGTAGACGTGCCTTGTCAGAAAACTATCAGGATTCCAAGTGTTTAGAAGGTCTTGATGACAGCACTTCTTGTATCAGTAGAGTAAGTAATGCTAGTTTAGTGAGTGGTAGCCATCAAATAAGTTCAGACAGAATAAATATATCTTGTAGTTCAGCTTCAGTTAGTCGCTTAGGGGCAGAAGGATCTAGAAGTGGGCCATCTGTTGGCATGTCTGAGATTCTCTCTTCTAAAGATGCAGATATCCCCGAAAATTTGTCAGAATGCTGTATGGAAAATGTTGATTCATCTTTGACCAAAGAGAGAGCACCTATTATTGTTTCCAGTGAAAAATCTCTTGCAGATAGGGATAACCCTATTAACGGTACTGCCAAAGTTTCAGTAAAAATATATCCAAAGTCAGAATCAGATACTGACAACAACGTTGGGGATGCTAAAGATGAAGATCATAAATTTTCAGCCCATGATGGACTGCATGAGAAGGCTGAGGAGCAGGTCAAATCACAACCTCAATCAGAAGATGAGAGTGATGACTCAGATGTTGTTGAGCATGATATAAAAGTATGTGACATCTGTGGAGATGCTGGTCGTGAGGATCTACTTGCCATATGTAGTAGGTGCAGTGATGGCGCGGAGCACACCTACTGCATGCGGGAAAGGCTTCAGAAGGTCCCTGAAGGGGATTGGTTATGTGAAGAATGCAAATATGCAGAGGAGACTGCAAATCAAAGGCTTGATGTTGAAGAAAAAATAATTCATAAAGTTAGTTCAACTTCACAAATTTGTGGCAAAAGGCCTTCTGAAAGCGTGGAAGTAGCTACATCGTCAAAAAGGCAAGCTCTTGAATCAAGCACAGGATCACCAAAGTCATCAAGTCCCAAGAGAATAGTTTCACTGTCACGTGAATCTTCATTCAAGAGCTTAGATAAAGGAAAGGTGAAACCTGGTCGTCAAATCCCCATTCGTAATCGCCCCGGTGGTGGTGACATAGAACTTGCTCGTTCTGTCTCCACTGGCTCTCGGAGCCAAACTGCAAAGAGCACATTGTTGAAGTCTAGTTCATTCAACAACTTCAATTCCAAGCCTAGAGTCAAACCTTTTGATGAAGTTGTTCCCCAGAAGCAGAAAGGGGGTGGCGAACATACTTCTAGGAACATGGATTCACCTGCTGGGATGATAAGCAAGTCAGTGTCATTTAAATCCTCAAATTTGGGTCGTTCAAGTGCTACTGAATCAAAAGTTAAAATGCTTTCTTCTAAGTCTGGAACTGCTCATGATTTAAAAGGATCAAGGAATGGAAAAGAATCAGGTGCATTTGACAGGAAATTTCTGTCTAGGGTTGATCGGCCTCTTGGTTGTTCAACCATGGCTAGTTTGGTTTCCACATCTAAGGTTGATCTGAACGTTACACCTCGTGGTGAAACAGCAAAACCTTCAGCAGTTAATAACAATCGAGACTTTAAGGTCAATCAAGATGGAAAATTAAGTTCATTGTCAAAGTCTATGAGTAATATAAGCCATAGAAGTCCGGATCCCCAAGTTTGTTCAGAGAGAACATCAACCAATGTTGATGAAACTCAACAGGATGGGCTGCCTCGATCACGAGAGACAGCAAACCAGGTTGACAAAACCAAAGATAGCTGTAGTGATCGTGTGTGGTCAGGTGTTACTGATGCTTCAAAAGGCCCATTCTGCCATAAATGTAAGGATTTTGTCCATGCTACGGAATGTTGCATATTTGGTAATACACAGGAATTTGGTGTTGAAGTATCAGTCACTGCCACAAGTACTTCCAAAGAGGATATTCATAAAGGTAATAGATTGAAAGCTGCAATCCAGGCAGCTTTGCTTAGAAGGCCTGAAATACAGAAGAAGAAAGAAGTACCTGATCAAACTGATGAGTTTCCTACATCAGGCGCAGACTTGAATTGTGAAATCACTTCTCAAGACCAAGTGTTGGTTTCCAACAAGAATAGTACATCTACTGCAGAAATCAATGCGAGTCAGGAAAGACTTGAGAATTCTGGGTTTGAAACTTCCAAATGTTTGTCCACCTATGATTTGAAGCAACATAGCTTTTCACCAACTGATTTTTGTTCTCAACCGAGAAAGTCAGATTCTGTTGGTCCTGCTTCTGGAAAGCCTGCAGTGAGAGACTTGCCTAATCACGCTTTGGCAATCTCAAGAGTTCTTTCAAAGATATCTGCGATTCCAGAATATGAAAACATCTGGCAGGGTGTCTTTCAAGTGCATAGAAGTGGAAAGCCTCCTGAGTTGTATACTGGAATTCAAGCACATTTATCCACATGTGCTTCCCCTAAGGTTTTTGAGGTAGTGAACAAGTTTCTACCTGAAATTTCCCTCAATGAAGTTTCTCGCTTGAGCACATGGCCTTCGCAATTTAATCAAGGTGGTGCTAAAGAAGATAATATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGTTATGAGAGACACTACAAGGGTCTATTGGATCACTTGATTAGAAATGATTTAGCGCTTAAAGGGATTTTTGATGGTTTTGAACTTCTCATATTCGCATCCAATCAGCTTCCTGAAAATTCACAGCGTTGGAATATGCTGTTTTTCTTGTGGGGCATATTTAGAGGGAGGAGGATTAATCATTCAGATTCTGCAAAAAAGATATTTATTCCCAGTTTGAATGTGATGTCAAATGAGAATAATTTTCCAACTGCTGTTATGACTTTGTCTGAAACTCGTTGTTCACCAAAGCGCATGGATGAAGAACCAATTACTTGTGACACATTTGGGTTCACAAAGTCAAGATATGAGAATCAACACCAAATTTACACCAAGGATTCTGACAAGCAGTTCGCAATTGTGCCAAGAAATAAATTCCACTGGTTCATCCCAGAAAGATACTGTACCTGCACATGGACAATACAGAGAGTCTAA 3159 0.408 MIQNTDMGLESGTCNVCSAPCSSCMHLNRAFMGSKAEEFSDENCRLGEANQHSMGETSNMHSVNSSHDSLSENAESRRALSENYQDSKCLEGLDDSTSCISRVSNASLVSGSHQISSDRINISCSSASVSRLGAEGSRSGPSVGMSEILSSKDADIPENLSECCMENVDSSLTKERAPIIVSSEKSLADRDNPINGTAKVSVKIYPKSESDTDNNVGDAKDEDHKFSAHDGLHEKAEEQVKSQPQSEDESDDSDVVEHDIKVCDICGDAGREDLLAICSRCSDGAEHTYCMRERLQKVPEGDWLCEECKYAEETANQRLDVEEKIIHKVSSTSQICGKRPSESVEVATSSKRQALESSTGSPKSSSPKRIVSLSRESSFKSLDKGKVKPGRQIPIRNRPGGGDIELARSVSTGSRSQTAKSTLLKSSSFNNFNSKPRVKPFDEVVPQKQKGGGEHTSRNMDSPAGMISKSVSFKSSNLGRSSATESKVKMLSSKSGTAHDLKGSRNGKESGAFDRKFLSRVDRPLGCSTMASLVSTSKVDLNVTPRGETAKPSAVNNNRDFKVNQDGKLSSLSKSMSNISHRSPDPQVCSERTSTNVDETQQDGLPRSRETANQVDKTKDSCSDRVWSGVTDASKGPFCHKCKDFVHATECCIFGNTQEFGVEVSVTATSTSKEDIHKGNRLKAAIQAALLRRPEIQKKKEVPDQTDEFPTSGADLNCEITSQDQVLVSNKNSTSTAEINASQERLENSGFETSKCLSTYDLKQHSFSPTDFCSQPRKSDSVGPASGKPAVRDLPNHALAISRVLSKISAIPEYENIWQGVFQVHRSGKPPELYTGIQAHLSTCASPKVFEVVNKFLPEISLNEVSRLSTWPSQFNQGGAKEDNIALYFFAKDIESYERHYKGLLDHLIRNDLALKGIFDGFELLIFASNQLPENSQRWNMLFFLWGIFRGRRINHSDSAKKIFIPSLNVMSNENNFPTAVMTLSETRCSPKRMDEEPITCDTFGFTKSRYENQHQIYTKDSDKQFAIVPRNKFHWFIPERYCTCTWTIQRV 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi102g00040 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 323 IPR013083 -
Gabi102g00040 1052 PANTHER - 261 973 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 52 70 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 695 715 - -
Gabi102g00040 1052 SMART PHD_3 262 309 IPR001965 -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 461 500 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 543 621 - -
Gabi102g00040 1052 ProSiteProfiles Zinc finger PHD-type profile. 260 311 IPR019787 -
Gabi102g00040 1052 SUPERFAMILY FYVE/PHD zinc finger 250 313 IPR011011 -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 409 435 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 337 378 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 543 609 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 199 254 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 52 78 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 213 248 - -
Gabi102g00040 1052 MobiDBLite consensus disorder prediction 337 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi102g00040 Gabi-Chr102 407774 414409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi102g00040 259 320 C2H2 Transcription Factor Family AT3G01460 35.484 3.22e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi102g00040 - - gmx:100784908 1435.62