Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1028g00011 ATGGCAGATTCTGATGAACTCGCCAAATCTGCTGAAACCCAGCAATCTGAACAAGTGTGTAGCTTCTTCAGAAAACCGGTTAATAAGAAGAATTTAAGGAAGCGTGCTGTTGATAATGAAGATGACGAGGAGGATTCAAACAATGAAAGCTCTTTGCTGCATATTCAGAAAAAGACTTTGAAGCCTGACAATAAGTTGTACTTTTCCTCGGGCTCCTCAAAAAGCTTAGCATCTGCTGAACCAAGTGAAGAGTCTGGGAAACCAGTTTTTCATTTTGAGTCTTCCAAAGAGATTCAAGTTCAACATGATAACAAAGCAACAGCAACTCTGGAGACTGAAACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGTGGAGAGCCTGAAGGGAAAAGGCACAAGTTCTGAAGATGGAAAATTATATAAGGGAATGAACAGTTACAAAGACCACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGAGCACATGGTCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGGGATGCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGAAAGATGAGATTGGCTGCAGGCGAGGATGCGGATCCGGATGAGGAGGGTGCTAATTTGACTGATGAAGAAGATGATGATGCATTACCATTTGCATGTTTCATTTGTAGACAGCCTTTTGTTGATCCTGTTGTAACCAAGTGCAAGCACTTCTTCTGTGAGCATTGTGCATTGAAGCATCATGCTAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACGCTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGGTAAATAA 993 0.428 MADSDELAKSAETQQSEQVCSFFRKPVNKKNLRKRAVDNEDDEEDSNNESSLLHIQKKTLKPDNKLYFSSGSSKSLASAEPSEESGKPVFHFESSKEIQVQHDNKATATLETETEFSKDARAIRERALKQAVESLKGKGTSSEDGKLYKGMNSYKDHKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDADPDEEGANLTDEEDDDALPFACFICRQPFVDPVVTKCKHFFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEGK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1028g00011 330 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Gabi1028g00011 330 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Gabi1028g00011 330 CDD RING-HC_RNF113A_B 264 317 - -
Gabi1028g00011 330 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Gabi1028g00011 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Gabi1028g00011 330 SUPERFAMILY RING/U-box 270 313 - -
Gabi1028g00011 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Gabi1028g00011 330 PANTHER ZINC FINGER PROTEIN 183 15 329 IPR039971 -
Gabi1028g00011 330 FunFam Zinc finger CCCH domain-containing protein 1 190 224 - -
Gabi1028g00011 330 MobiDBLite consensus disorder prediction 31 112 - -
Gabi1028g00011 330 MobiDBLite consensus disorder prediction 86 100 - -
Gabi1028g00011 330 MobiDBLite consensus disorder prediction 62 80 - -
Gabi1028g00011 330 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Gabi1028g00011 330 SMART ring_2 271 308 IPR001841 -
Gabi1028g00011 330 FunFam RING finger protein 113A 269 328 - -
Gabi1028g00011 330 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Gabi1028g00011 330 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Gabi1028g00011 330 Gene3D - 190 224 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1028g00011 10 328 C2H2 Transcription Factor Family AT1G01350 68.966 1.46e-164 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1028g00011 zf-C3HC4_3 5e-09 CL0229