Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1028g00005 ATGAGTGCAAAGGGACCTAAATTTGTGAGGTTTGAGGACTGGAGATCAGAGGCATCTTTTAGTACAGAGCAGGAAGGTTCGGTTAACAATGGATATCAGAAAAGAAAAGGTAGACCAAGTGCAAGTTCTGTTTTAAAGAGTATAAGAAGAAGAATCGAGAGTGGTTCAGAGAAGATCAAGAACTTGAGAAGACCTTCAGCTGTTCATCCTGTAAGCGATGGACAAACCAAAAAGCTGGCTTCTAAGTCCAAAATTCTTGATCCACAAGGGCCAGTCCTTCAGAAATGGAACAAAATCTTTGTAATCACATGTGTGATGGCAGTCTCTGTGGACCCGCTGTTCTTCTACACTCCAGTGATCAATGAAAATCTCAAGTGTCTTGATCTGGATGGAACATTGCAGATTACAGCTAGTGTTCTTCGCACGTTCTTTGATCTTTTCTACATTCTTCACATAATCTTTCAGTTTCGAACAGGGTTTTTTCCTCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTTATTGATGATCCTGTGGCTATAATGAAAAGATACTTATGTTCGTACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTGGTTGTTTTAGCTATTGTCCCAAGCCTGAAAACCTCACTTCCATTCGTAGCAAAGGATTTGTTGAAGTATATAGTATTAATCCAGTATGTGCCAAGACTTGTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATATTGTTGGATCCAGCTGGTATCTGCTTTCAGTAGAATCAGAGGTGCGGTGCTGGAGCCGAGAGTTGAAGAATGCTTCCCTCTTTCATGAATCATACTTGGGCTGTGAACACGGCAATCAAAATGTCATATCACTTCTCAATAGTACTTGCTCTTTCATTGACCCTGATCAAATCCAAGACCCAAACGTCTTCAATTTTGGAATATATTTCGATGCTCTAGACTCACGTGTGGTAGAATCAACAACAGATTTTCCGCAGAAGTTCTTCTACTGCTTTTGGTGGGGATTGCGTAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTATGTCGCGGAGATAATCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTGTTCTCATTACTTATTGGAAATATGCAGAAATATCTGCAATCTACAACAGTTAGAGTTGAAGAGATGAGAGTGAAGAGGAGGGACGCAGAACGATGGATGTCCCACCGTATGCTACCAGAGAACTTGAAGGAAAGAATCAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTGATTCGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTAGCTTTACTTAAAAAAGTGCCATTGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCGTTGTGTGATAGACTGAAGCCAGTACTTTATACGGAGAAGAGCTACATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTGCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTTCTCGAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCACTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCACAGCAAACAGCTCCAGCACACTTTCAGGTTCTATTCCTCCCAATGGAAGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTACGTGAAGCAGAAGACAAGCTACAAGATGCTTTTGTAAATGAGGATGGATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCATTACGAACCTTGAGAGAAAATAGCACACGCAACAGAATGTCACCGAGACTCCTACCTCTGTTGCCACCAAAGCCAGCTGAGCCAGACTTCACTGCTCAGAAACACTAG 2160 0.4171 MSAKGPKFVRFEDWRSEASFSTEQEGSVNNGYQKRKGRPSASSVLKSIRRRIESGSEKIKNLRRPSAVHPVSDGQTKKLASKSKILDPQGPVLQKWNKIFVITCVMAVSVDPLFFYTPVINENLKCLDLDGTLQITASVLRTFFDLFYILHIIFQFRTGFFPPSSRVFGRGELIDDPVAIMKRYLCSYFIIDILSIIPLPQVVVLAIVPSLKTSLPFVAKDLLKYIVLIQYVPRLVRIYPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHIVGSSWYLLSVESEVRCWSRELKNASLFHESYLGCEHGNQNVISLLNSTCSFIDPDQIQDPNVFNFGIYFDALDSRVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVAEIIFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPENLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLALLKKVPLFEKMDEQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKVATMTTNGGRTGFFNSLFLEAGDFCGEELLTWALDPNSSSNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLHSKQLQHTFRFYSSQWKTWAACFIQAAWRRYWKKKIERSLREAEDKLQDAFVNEDGSSLSLGATIYASRFAANALRTLRENSTRNRMSPRLLPLLPPKPAEPDFTAQKH 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1028g00005 719 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Gabi1028g00005 719 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Gabi1028g00005 719 MobiDBLite consensus disorder prediction 693 719 - -
Gabi1028g00005 719 Gene3D - 98 415 - -
Gabi1028g00005 719 CDD CAP_ED 491 622 IPR000595 -
Gabi1028g00005 719 Pfam Cyclic nucleotide-binding domain 511 601 IPR000595 -
Gabi1028g00005 719 SUPERFAMILY Voltage-gated potassium channels 87 413 - -
Gabi1028g00005 719 MobiDBLite consensus disorder prediction 20 37 - -
Gabi1028g00005 719 SMART cnmp_10 491 622 IPR000595 -
Gabi1028g00005 719 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Gabi1028g00005 719 Gene3D Helix hairpin bin 418 482 - -
Gabi1028g00005 719 Gene3D Jelly Rolls 489 609 IPR014710 -
Gabi1028g00005 719 MobiDBLite consensus disorder prediction 19 45 - -
Gabi1028g00005 719 SUPERFAMILY cAMP-binding domain-like 420 614 IPR018490 -
Gabi1028g00005 719 Coils Coil 643 663 - -
Gabi1028g00005 719 Pfam Ion transport protein 96 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1028g00005 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1028g00005 Gabi-Chr1028 23188 28346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1028g00005 1 716 Ion Channels AT5G53130 65.833 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1028g00005 K05391 - gmx:100797784 1214.13