Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1028g00002 ATGGAGCACAACAACGACAACAACAAGATGTACAACATGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTATTATTCCCATCTCCGATCGCATACGCGAATTCCATAAAGGATCGCCTATTCGAACTCACCGGAATCCCGACGCAACACCAGCGTCTGGTGACGGGGTGTCGGCACCTGAACGACGAGAAATCGGCGATATGGTGCTCGCCGGAAGGCGGGAACATGTTCCCGTCGGTGCGGCTACTGCTGCGGCTGAAAGGAGGGAAGGGAGGGTTCGGATCGCTTCTGCGTGGGGCGGCGACGAAGGCTGGGCAGAAGAAGACGAACAATTTCGATGCTTGCAGGGATATGAGTGGGCGAAGGCTGAGACACGTGAACGCTGAGAAGAGGTTGGAGGAGTGGAAGGCTGGGGAAGAGGAGAGGAAGTTGGAGAAAGTGGCAGAGGAGTTTCTGAAGAAGCAAATGAAAAAGAAGGGTAAGAAGGGTGTGAATGATGCTGAGACCCACAAGTACGTTGCTAAATATAGGGAGGATTCTGAACGCTGCGTTGCAGAGGTTGCCTTGTCCGTCAAGGAGGCTCTCAATTGTAAGCGGAAACTTTCAGAAGCTTCCCCTCCCCAAGATGCCAAGAAGATGAAGATATGGATGGGGAAGAGAAAATTGACTGGAAGTGATAGTGATGATTCCGATGAGGAGGTGGAAAATGAGAAATCCATTTTATTGAGTGCTCAGAATGAGTCAGATTCAAATAAGGCCGAAGACAGTTCAGGTTCAGTAACTGGTAGGAAACAGGATGGAGACTCTTCTGGTGCAGGATCGTGTGAAAGTGGATCTGAAGAAGATAAAGAAACTGTTGAACCTCAGGGTAATGAAACTATTCAGGCCATACTGAGTGTTGCTGCTGAACCTGTGATAAATTGTGAGATGATTGAGGCTGCTCCTATGCCTTGTTCTGAGTCTCTAGTTTCTGGATTCACGGATTGCAACGAAGCTGTATCTGACAAGTTTGATGGAAGTGTTAGTCAAGCCTCAAATGTTATGAGCTCTGAAACTGTGGTTGGTGCAAGCCAATCTAATGATATGGAAATTGATGGATGTCTGGAGCAAAAAGTAGCAGTCCATGAAGAAAGCTCGCCAAGCACTAGTGTTCCAGCATTTGAGGAGCCTCTGAATTTTGATGTTTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAATCCGAACTGCAGTCGCGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCCAGGCTTTTTCTTTTAAAATCCACTCCTCTGGATAAACTTCCAAAGAAGCTGCTAGCCAAGAAATGA 1359 0.4761 MEHNNDNNKMYNMFVKHLDGKTLTLLFPSPIAYANSIKDRLFELTGIPTQHQRLVTGCRHLNDEKSAIWCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKKGKKGVNDAETHKYVAKYREDSERCVAEVALSVKEALNCKRKLSEASPPQDAKKMKIWMGKRKLTGSDSDDSDEEVENEKSILLSAQNESDSNKAEDSSGSVTGRKQDGDSSGAGSCESGSEEDKETVEPQGNETIQAILSVAAEPVINCEMIEAAPMPCSESLVSGFTDCNEAVSDKFDGSVSQASNVMSSETVVGASQSNDMEIDGCLEQKVAVHEESSPSTSVPAFEEPLNFDVFNSAAELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1028g00002 452 MobiDBLite consensus disorder prediction 202 291 - -
Gabi1028g00002 452 Pfam Replication stress response SDE2 C-terminal 379 451 IPR025086 -
Gabi1028g00002 452 SUPERFAMILY Ubiquitin-like 8 75 IPR029071 -
Gabi1028g00002 452 MobiDBLite consensus disorder prediction 240 277 - -
Gabi1028g00002 452 MobiDBLite consensus disorder prediction 202 228 - -
Gabi1028g00002 452 Gene3D - 2 92 - -
Gabi1028g00002 452 PANTHER SPLICING FACTOR SF3A-RELATED 12 451 - -
Gabi1028g00002 452 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 166 IPR024974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1028g00002 Gabi-Chr1028 6341 8614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1028g00002 385 451 C2H2 Transcription Factor Family AT5G06160 47.761 4.83e-11 62.8