Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1028g00001 | TGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGGATTGGTCAGGTATGTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAAAACAGACTACTATTGCCCAGATTGCAAGGGAAAATTCAATTGCAAATTATCAGCATCACAAACATACAAGTCAAAAATCAAGTATGCATCTGTAATTATTTTCTATTGCTTCCTTTTCCTAGGGACTTATATTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCTCGTGTGGTTCAAGGAAGCAGACCCCGATTGAATGGGAAGGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTGGAAAGCACAATGCAACCGCTGATAAAATGGATCACGAAGCACAAATCTCAACCTGGTATTCCTCTACGGTTAGATCAGCAAAAGGTGCTCTCCTTTTTGCAAGAGAAGTATGAGCCTGTTTATGCAAGATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGACTGGGAAGATAACAAAATAATTATCTGTAACAGGTGCCAAATTGCAGTTCACCAAGAATGCTATGGGGCAAAGAATGTTCAGTTTACTTCCTGGGTTTGCAGAGTCTGTGAAACTCCTGATGTTGAGGGGAGGGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTTTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAACCATGAGGCAATGGAACCCGCCACTGGAATCCTTAAGATTCCATCTAATTCCTTTTTGAAGACTTGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACACATTTTCATGTGATGTGCGCATCAAGAATGGGATATAGCATGGAATTGCATTCCACGGAGAAGAAAGGAAATCATATAACAAAGAAGCTAATATATTGTGCAGTTCACAGGGTCCCAAACCCAGATTCAGGACTAGTTGTACATACCCCCCTTGGGGTTTTCTCTCCAAGAACTTCGCTTCCAAAAAACAAGGGGTGCTTCAGGGTATCAAGGCTGGTTTCATCAAAGAATATAGAACTCCTTGAGTCTTCAACCTTTGAAGGTTCTGAGGTTGAGCCACTGTCTGCTGCCAGATGTCGTCTGTACAGAAGGTCTCCCAATAAGAAGGATAATGTGCCAATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAGCTCAACTGAACAGCAATAAGGATGATGAAGTATTTTCTTCTTTGAAGGAACATCTTCGCCATTTACAGAAGACGGAAAACCATAGAGTTTGCTTTGGAAAATCAGGTATTCATGGATGGGGCCTCTTTGCACGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGAAGGTAAGGCGTAGTGTTGCTGATATGAGGGAAGCAAGGTACCGTTCAGAAGGCAAAGATTGTTATCTATTCAAGATTAGCGAGGAAGTGGTAATTGATGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCACGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGTTGGTGTAGAACTAACGTATGACTACTTGTTCGATCCAGACGAACGAGATGAACTCAAGGTTCCTTGCCTCTGTAAAGCCCCCAATTGTAGGGAATTTATGAACTAG | 1818 | 0.4219 | CGICKKIWHHSDGGDWSGMCDGCNVWVHAECDKISSKLFKDLEKTDYYCPDCKGKFNCKLSASQTYKSKIKYASVIIFYCFLFLGTYIPKLHLVMCKCGSCGSRKQTPIEWEGHAGCRAKKWKYSVKVESTMQPLIKWITKHKSQPGIPLRLDQQKVLSFLQEKYEPVYARWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQFTSWVCRVCETPDVEGRECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPATGILKIPSNSFLKTCVICKQSHGSCTSCCKCATHFHVMCASRMGYSMELHSTEKKGNHITKKLIYCAVHRVPNPDSGLVVHTPLGVFSPRTSLPKNKGCFRVSRLVSSKNIELLESSTFEGSEVEPLSAARCRLYRRSPNKKDNVPIIHLLGGPNLHSLSAIAQLNSNKDDEVFSSLKEHLRHLQKTENHRVCFGKSGIHGWGLFARRELQEGEMVVEYRGEKVRRSVADMREARYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCTPNCFARIMCLGDQESRIVLIAKTNVSVGVELTYDYLFDPDERDELKVPCLCKAPNCREFMN | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1028g00001 | 605 | SUPERFAMILY | FYVE/PHD zinc finger | 175 | 239 | IPR011011 | - | |
| Gabi1028g00001 | 605 | FunFam | Histone-lysine N-methyltransferase | 438 | 605 | - | - | |
| Gabi1028g00001 | 605 | SMART | set_7 | 463 | 586 | IPR001214 | GO:0005515 | |
| Gabi1028g00001 | 605 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 605 | IPR025780 | - | |
| Gabi1028g00001 | 605 | SMART | PHD_3 | 176 | 222 | IPR001965 | - | |
| Gabi1028g00001 | 605 | SMART | PHD_3 | 1 | 53 | IPR001965 | - | |
| Gabi1028g00001 | 605 | SMART | PHD_3 | 287 | 343 | IPR001965 | - | |
| Gabi1028g00001 | 605 | Gene3D | SET domain | 432 | 605 | IPR046341 | - | |
| Gabi1028g00001 | 605 | ProSitePatterns | Zinc finger PHD-type signature. | 177 | 221 | IPR019786 | - | |
| Gabi1028g00001 | 605 | CDD | SET_SETD1-like | 454 | 601 | - | - | |
| Gabi1028g00001 | 605 | CDD | PHD_ATX3_4_5_like | 176 | 221 | IPR042011 | - | |
| Gabi1028g00001 | 605 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 56 | IPR013083 | - | |
| Gabi1028g00001 | 605 | PANTHER | PHD FINGER PROTEINS | 120 | 582 | - | - | |
| Gabi1028g00001 | 605 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 228 | 343 | IPR034732 | - | |
| Gabi1028g00001 | 605 | CDD | PHD_TCF19_like | 1 | 52 | - | - | |
| Gabi1028g00001 | 605 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 344 | IPR013083 | - | |
| Gabi1028g00001 | 605 | SUPERFAMILY | FYVE/PHD zinc finger | 1 | 60 | IPR011011 | - | |
| Gabi1028g00001 | 605 | Pfam | PHD-zinc-finger like domain | 230 | 342 | - | - | |
| Gabi1028g00001 | 605 | FunFam | Histone-lysine N-methyltransferase | 225 | 345 | - | - | |
| Gabi1028g00001 | 605 | SMART | PostSET_3 | 589 | 605 | IPR003616 | - | |
| Gabi1028g00001 | 605 | Pfam | SET domain | 474 | 579 | IPR001214 | GO:0005515 | |
| Gabi1028g00001 | 605 | ProSiteProfiles | Post-SET domain profile. | 589 | 605 | IPR003616 | - | |
| Gabi1028g00001 | 605 | ProSiteProfiles | SET domain profile. | 463 | 580 | IPR001214 | GO:0005515 | |
| Gabi1028g00001 | 605 | ProSiteProfiles | Zinc finger PHD-type profile. | 174 | 224 | IPR019787 | - | |
| Gabi1028g00001 | 605 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 225 | IPR013083 | - | |
| Gabi1028g00001 | 605 | Pfam | PHD-finger | 189 | 222 | - | - | |
| Gabi1028g00001 | 605 | SUPERFAMILY | SET domain | 455 | 601 | IPR046341 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1028g00001 | Gabi-Chr1028 | 6 | 5826 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1028g00001 | 177 | 333 | C2H2 Transcription Factor Family | AT3G14740 | 34.524 | 2.66e-20 | 90.9 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Gabi1028g00001 | zf-HC5HC2H_2 | 2.1e-27 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1028g00001 | - | - | gmx:100793624 | 1031.55 |