Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1026g00001 CATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATAATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAGGAGCAATTTCCATCGTTCTAACGCAACAACGTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGGAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATAAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAAACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAACATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCATAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATACGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGGATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1785 0.4022 HPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHNVCVWIDALANAISHVRISEPKRSNFHRSNATTFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMREMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDIRINRDQDEREPDNNNSRDLNLQRFHEKKKSVKKAEGFGLASNFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASHRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINTETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEGWSRCRSDFNKVWAEIYSKNHLK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1026g00001 594 Pfam Paired amphipathic helix repeat 313 358 IPR003822 GO:0006355
Gabi1026g00001 594 Pfam Paired amphipathic helix repeat 115 159 IPR003822 GO:0006355
Gabi1026g00001 594 FunFam Paired amphipathic helix protein SIN3 288 363 - -
Gabi1026g00001 594 ProSiteProfiles PAH domain profile. 291 361 IPR003822 GO:0006355
Gabi1026g00001 594 Coils Coil 494 521 - -
Gabi1026g00001 594 MobiDBLite consensus disorder prediction 163 264 - -
Gabi1026g00001 594 SUPERFAMILY PAH2 domain 292 359 IPR036600 GO:0006355
Gabi1026g00001 594 Gene3D Paired amphipathic helix 92 162 IPR036600 GO:0006355
Gabi1026g00001 594 MobiDBLite consensus disorder prediction 194 228 - -
Gabi1026g00001 594 SMART hdac_interact2seq4b 421 521 IPR013194 -
Gabi1026g00001 594 SUPERFAMILY PAH2 domain 89 161 IPR036600 GO:0006355
Gabi1026g00001 594 MobiDBLite consensus disorder prediction 379 404 - -
Gabi1026g00001 594 FunFam Paired amphipathic helix SIN3-like protein 91 162 - -
Gabi1026g00001 594 ProSiteProfiles PAH domain profile. 90 162 IPR003822 GO:0006355
Gabi1026g00001 594 MobiDBLite consensus disorder prediction 237 264 - -
Gabi1026g00001 594 Pfam Sin3 family co-repressor 423 515 IPR013194 -
Gabi1026g00001 594 PANTHER SIN3B-RELATED 97 594 IPR039774 GO:0003714
Gabi1026g00001 594 Gene3D Paired amphipathic helix 289 362 IPR036600 GO:0006355
Gabi1026g00001 594 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1026g00001 Gabi-Chr1026 164 8283 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1026g00001 Sin3_corepress 7.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1026g00001 K11644 - gmx:100807181 769.615