Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1024g00015 ATGTTCGCCGCCTTTGCTTCCCCGCGAGTCCTTTATCCACTTTTTCTTCTTCTTCTCCTCTCATTCTTCTCACTACTCAACAGTGTCAAATCTGACGAGCGTCAAATTCTACTGAAACTGAAATCCTCACTTGAGAATTCAAATTCAAATTCAAATTCAAAAGTGTTTGACTCATGGAATGCAACCAATTCCATATGCAGTTTCAAGGGTATCACTTGCAACTCCAACGGTTCCGTCACCGAAATCAACCTTTCCAATCAAATGCTATCGGGGGTTCTCCCTCTGGACTCGCTCTGCAACCTTCAATCACTGGAGAAGCTCGTGTTCGGTTTCAACTCTTTGTATGGAGGAGTTGCAGAGGAGCTTAGAAACTGTGTCAAGTTGCAATACTTGGACTTGGGAAACAACGTTTTCTCGGGACAATTCCCTGATATATCTCCTCTTAACCAATTACAGTACCTGTTTTTGAACAAGAGTGGAATCTCAGGAACTTTTCCTTGGCAATCCCTTCTGAACATGACGGGTATGTTGCAGTTGAGTGTTGGAGATAACGCTTTCGACCTCACTCCTTTTCCCACGGAGGTGTTGAGCCTCAAGAACCTTAACTGGCTCTACCTGACGAATTGCACCATTGGAGGGAAAATACCGGTTGGGATTGGTAACCTCACGGAGCTTACCGAATTGGAATTTTCCAACAATTTCATTTCCGGTGAGTTTCCCGCGGAGATTGGGAACCTTGGGAAACTGTGGCAGCTTGAATTCTACGACAACTCCTTCAAGGGGAAGATTCCGATTGGGTTGAGAAACCTCACTGGGCTTAGGTATTTTGATGGTTCCACTAATCAAATCGAAGGGGATCTCTCTGAATTGAGGTTCTTGACAAATCTGGTTTCTCTTCAACTTTTTGAGAACAATTTGACAGGGGTGATTCCACCCGAGTTTGGCGAGTTCAAAGACCTGGTGAACCTGTCTCTGTACAGGAACAAATTGACGGGTCCTATTCCTCAGAAGATTGGTTCTTGGGCAGAGTTCGATTTCATCGACGTGTCGGAGAATTTGTTAACCGGTCCTATTCCGCCGTATATGTGCAACAAGGGGAAGATGAAAGAGCTGCTGGTTCTTCAGAACAACCTCACCGGCGAGATTCCGGCGAATTATGGAAACTGTTTGACTTTAAAACGATTCAGAGTGAGCAAAAACTCGCTCTCGGGAACCGTCCCTTCTGGGATATGGGGATTGCCCGAAGCTGAAATAATCGATATTGAAGAGAATGAGTTAGAAGGTTCGGTTACTTCAGATATCCAAAACGCGAAGACGCTTGCTAGTATAATCGCCAGAAGGAACCGGTTATCCGGGGAAATACCAGAAGAAATCTCAAAAGCGACGTCGTTGGTGAGCATCGACCTGAGCGAGAATCAAATTACGGGGAACATTCCAGAAGGAATTGGCGAGCTTAAACAACTCGGTAACCTTCATTTACAGAGCAACAAGCTATCTGGGTCCATACCTGACTCTTTAGGTTCGTGTAACTCCCTCAATGACGTGGACCTGTCATGGAATTCGCTCACCCAAGATATCCCTTCATCGTTGGGTTCCTTACCTGCTCTGAATTCTCTTAACCTGTCACGCAATGAACTCACCGGTGAAATCCCGGGGAGTTTAGCGTTGCTCAGGCTCAGCCTCTTTGATCTATCGCATAACCAATTGAAAGGTCCAATACCACAAGCTCTAACCCTTCAAGCTTATAACGGTAGCCTCACCGGAAACCCTGGTCTCTGCAGTCTCGACGGAATTAGCTCCTTCCCTCGTTGCTCTGATTCCGATGGCTTGTCCAAGGACGTTCGCACACTCATCATTTGCTTCGCAATAGCTTCGATCTTGTTACTCTCGTGTTTGGGGCTTTACTTGCAGTTGAAGAAGAAGAAGGAGGAGGAGAAATATGGAGGAGGAGGAGAACGTTCTCTGAAGGAAGAATCTTGGGATGTTAAATCCTTCCACGTGCTAAGTTTCACGGAGGATGAGATTCTGGATTCCGTTAAGCAGGAGAATCTCATAGGGAAAGGAGGTTCTGGGAATGTTTATAGAGTCACTCTCTCAAGTGGGAAAGAACTCGCCGTTAAACATATCTGGAATACCGATTTCGCCGCCCGGAAAAAGTCTTGGAGCAGCACTCCGATGCTCGGAAAGCGCGGCGGGAAGTCGCAGGAATTCGATGCGGAGGTTCAGACCTTGAGCTCGATCAGGCACGTGAATGTGGTGAAGCTTTATTGCAGCATCACGAGTGAGGATTCGAGCTTGTTGGTGTATGAATATTTGCCAAATGGAAGCTTATGGGATCGGCTTCACACGAGTGGGAAGATGGAGCTTGATTGGGAAACGAGGTATGAAATTGCGGTTGGTTCAGCCAAAGGTTTGGAGTATCTGCATCATGGGTGTGAGAGGCCTGTGATTCACAGGGATGTTAAGTCGAGTAACATTTTGTTAGATGAGTTCTTGAAGCCTAGGATTGCTGATTTTGGACTAGCTAAGATTGTTCAAGCCAATGTTGTCAAGGATTCTACTCATGTTATTGCTGGAACCCACGGTTATATTGCTCCGGAATATGGGTACACTTACAAAGTGAATGAGAAAAGTGATGTGTACAGCTTTGGAGTGGTGTTAATGGAGCTGGTAACTGGTAAAAGGCCAATTGAAGCAGAATTTGGAGAAAACAAGGACATAGTAAGCTGGGTGCATAGCAAGACACAAAGCAGAGAGAGGTTTACGAGTGCAGTGGACACGAGAATCCCAGAGATGTATAAAGAGGAAGCTTGCAAGGTGTTGAAAACAGCAGTTCTCTGCACGGCAACTCTTCCAGCTTCAAGGCCCACAATGAGAGCCGTGGTTCAAATGCTTGAGGATGCTGAGCCTTGTAAATTGGTTGGAATTGTCATCACCAAAGACGGAAGTGGAAAGAAAATAGGAGTGAAAGACAAATAA 2979 0.4582 MFAAFASPRVLYPLFLLLLLSFFSLLNSVKSDERQILLKLKSSLENSNSNSNSKVFDSWNATNSICSFKGITCNSNGSVTEINLSNQMLSGVLPLDSLCNLQSLEKLVFGFNSLYGGVAEELRNCVKLQYLDLGNNVFSGQFPDISPLNQLQYLFLNKSGISGTFPWQSLLNMTGMLQLSVGDNAFDLTPFPTEVLSLKNLNWLYLTNCTIGGKIPVGIGNLTELTELEFSNNFISGEFPAEIGNLGKLWQLEFYDNSFKGKIPIGLRNLTGLRYFDGSTNQIEGDLSELRFLTNLVSLQLFENNLTGVIPPEFGEFKDLVNLSLYRNKLTGPIPQKIGSWAEFDFIDVSENLLTGPIPPYMCNKGKMKELLVLQNNLTGEIPANYGNCLTLKRFRVSKNSLSGTVPSGIWGLPEAEIIDIEENELEGSVTSDIQNAKTLASIIARRNRLSGEIPEEISKATSLVSIDLSENQITGNIPEGIGELKQLGNLHLQSNKLSGSIPDSLGSCNSLNDVDLSWNSLTQDIPSSLGSLPALNSLNLSRNELTGEIPGSLALLRLSLFDLSHNQLKGPIPQALTLQAYNGSLTGNPGLCSLDGISSFPRCSDSDGLSKDVRTLIICFAIASILLLSCLGLYLQLKKKKEEEKYGGGGERSLKEESWDVKSFHVLSFTEDEILDSVKQENLIGKGGSGNVYRVTLSSGKELAVKHIWNTDFAARKKSWSSTPMLGKRGGKSQEFDAEVQTLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSGKMELDWETRYEIAVGSAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVVKDSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEAEFGENKDIVSWVHSKTQSRERFTSAVDTRIPEMYKEEACKVLKTAVLCTATLPASRPTMRAVVQMLEDAEPCKLVGIVITKDGSGKKIGVKDK 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1024g00015 992 Pfam Protein kinase domain 681 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00015 992 ProSitePatterns Protein kinases ATP-binding region signature. 685 718 IPR017441 GO:0005524
Gabi1024g00015 992 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 365 450 - -
Gabi1024g00015 992 SMART serkin_6 679 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00015 992 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 451 608 - -
Gabi1024g00015 992 Gene3D Ribonuclease Inhibitor 363 610 IPR032675 -
Gabi1024g00015 992 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 772 977 - -
Gabi1024g00015 992 SUPERFAMILY L domain-like 281 604 - -
Gabi1024g00015 992 Gene3D Ribonuclease Inhibitor 32 145 IPR032675 -
Gabi1024g00015 992 FunFam Receptor-like protein kinase 7 118 364 - -
Gabi1024g00015 992 FunFam Receptor-like protein kinase HAIKU2 662 771 - -
Gabi1024g00015 992 Gene3D Transferase(Phosphotransferase) domain 1 772 974 - -
Gabi1024g00015 992 Gene3D Ribonuclease Inhibitor 146 362 IPR032675 -
Gabi1024g00015 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Gabi1024g00015 992 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 219 966 - -
Gabi1024g00015 992 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Gabi1024g00015 992 SUPERFAMILY Protein kinase-like (PK-like) 671 966 IPR011009 -
Gabi1024g00015 992 Gene3D Phosphorylase Kinase; domain 1 662 771 - -
Gabi1024g00015 992 ProSiteProfiles Protein kinase domain profile. 679 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00015 992 SUPERFAMILY RNI-like 81 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1024g00015 Gabi-Chr1024 147185 150570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1024g00015 23 985 Receptor kinase-like Gene Family AT1G09970 62.293 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1024g00015 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1024g00015 - - gmx:100809356 1519.21