Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1024g00014 ATGGATCATCCATTCATTCTCTTTGTTATTGGACTCATTATTTCCATGGCTAGTATCTCACAGGTTATTAGCAGTACCAACCAGTCTCAGTTTTTTTCTCTGATGAAGGAGTCTCTCTCAGGGAACTACCCTCTGGATTGGGATGTCAAAGCTGGGAAACCAGTATGTGCCTTCACAGGAGTTACATGCAACAACCAAGGGGAAGTTATCAATCTTGACCTTTCAGGTTGGTCACTTTCTGGAAAGTTCCCTTCAGATTTATGCACTTACATGCCAGAGTTGAGAGTTCTCAGCCTTGGACACACAAGGTTCAAGTTTCCTACAAACAGCGTAATCAACTGTTCTCATTTGGAAGTGCTTAACATGAATCATATGTATCTGACTGGCACACTTCCAGATTTCTCTCCTTTGAAATCTCTTAGGGTCCTTGATTTGTCATACAACGCCTTCACAGGTGAATTCCCCATGTCAGTATTCAATCTCACTAGACTCGAGGTGCTAAACTTCAATGAAAATGGAGGTTTCAGCCTGTGGCAGCTGCCAGATGATATTGACAGGCTGAAAAATCTCAAGTCCATGGTGTTGACAACTTGCATGGTGTATGGCCAAATCCCAACATCCATAGGGAACATCACTTCTCTTACTGATCTTGAATTGAGTGGGAATTTCCTCACAGGCCAAATTCCTGCAGAGCTTGGATTGCTGAAAAACTTGCAACAGCTTGAGCTTTACTATAACCAACACCTTGTTGGTTATATACCTGAGGAGCTGGGAAATCTCACAGAGCTCATAGATTTGGATATGTCAGTGAACAAGTTGACTGGGAGCATCCCTGCATCAATATGTAGCCTTCCCAAGCTTCAAGTCCTGCAGCTTTACAACAATAGCCTCTCAGGAGAACTCCCAGGTGAGATTGAAAACTCAACAACATTGAGAATGTTATCTCTTTATGACAATTTCCTGAAAGGACAAGTCCCTAGTAAACTGGGACAATTCTCAGGAATGGTAGTTCTGGACTTGTCAGAAAACAGTTTCTCTGGTCCATTGCCAACACAAGTTTGCAAGGGAGGTAAACTACTCTATTTTCTTGTTTTGGATAACATGTTTTCTGGAAAGATACCAGACAGTTATGCAAACTGCATGATGCTGTTAAGGTTTCGAGTCAGTAATAACCACCTGGAGGGCTCGGTTCCCGAGGGACTCCTTGGTCTACCACATGTTTCAATCATTGATCTGAGTAACAATAATTTGACTGGTCCAATTCCTGAGATCAGTGGAAATGCTAGAAACTTGTCTGAACTGTTCCTACAAAAGAACATGATCTCAGGAGTCATACCTCCTACAATCTCTCGAGCCATTAACCTTGTCAAGATTGATTTCAGCTATAACTTTCTGTCTGGTCCAATCCCTTCGGAAATTGGCAATCTGAGAAGGCTTAATTTGCTAATGTTACAAGAGAACAAGCTGAATTCTTCCATCCCAACTTCACTCTCCTCATTGGAGTCACTCAACCTTCTTGATCTTTCCAACAACCTTTTAACAGGAAGCATCCCTGAAAGCCTCTCAGTACTGCTACCAAACTCCATTAACTTCTCACATAACTTGCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGAGGTTTGGTTGAAAGCTTTTCAGGGAATCCTGGTCTGTGTGTGCAACCAACATATGCTAATTCATCGGATCCAAGCTTCCCCACATGTTCAATTGCCCACAAGAGTAAGAGAATAAACACCATCTGGGTAGCTGGGGTATCTGTGGTTTTAATCTTTATTGGAGCTGTCTTGTTTCTGAAACGTAGGTGCAGCAAAGAGACAGCTGCAGTGAAACATGAGGATACACAACCTTCTTCATTCTTCTCTTATGATGTTAAGAGCTTTCACAGGATCAGTTTCGACCAAAGGGAGATCATAGAATCCTTGGTTGAGAAGAACATAATAGGACATGGAGGGTCTGGGACAGTGTACAAGATTGATTTGAAAAGCGGTGATACTGTTGCAGTCAAGAGGCTGTGGAGTAGAAAATCCAAGGATTCAGCTCCAGAGGATCGAATGTTTGTAGACAAAGCATTGAAAGCAGAAGTGGAGACCCTGGGAAGTATTAGACACAAAAACATAGTGAAACTGTACTGCTGTTTCTCCAGTTTGGAATGTAGCTTGTTGGTTTATGAGTACATGCCAAATGGTACTCTATGGGACTCCTTGCACAAAGGTTGGGTCCATTTGGATTGGCCTACTCGCTATAAGATTGCACTTGGGATTGCACAGGGTTTGGCATACCTCCACCATGATTTGGTTCTTCCTATTATCCATCGAGACATCAAATCAACTAATATCCTTTTGGATGTTGATTACCATCCCAAGGTTGCAGACTTTGGTATCGCCAAAGTTTTGCAAGCTAGAGGCGGGAAGGATTCCACAACAACTGTTATTGCTGGAACTTATGGTTACTTAGCCCCAGAATATGCATATTCCCCCAGGGCCACCACCAAGGGTGATGTCTACAGTTTTGGGGTGATTTTGTTGGAACTGTTAACTGGGAAGAAGCCCGTTGAGTCAGAATTTGGAGAGAACAGAAATATTGTCTTTTGGGTTTCAAACAAAGTAGAAGGCAAGGAAGGTGCTAGACCAAGTGATCTATTTTACCCTCGATCCTCACCCATATTCAAGGATGACATGATTAAAGTGTTGCGAATTGCCATTCGTTGCACGTACAAAGCTCCATCTAGTAGACCAACAATGAAAGAGGTTGTTCAGTTGCTGATTGAGGCAGAGCCACGTGGTTCAGATTCTTGCGAGTTGTTAACCAAAGATGCATCAAATGTCACCTTATTATAA 2862 0.4252 MDHPFILFVIGLIISMASISQVISSTNQSQFFSLMKESLSGNYPLDWDVKAGKPVCAFTGVTCNNQGEVINLDLSGWSLSGKFPSDLCTYMPELRVLSLGHTRFKFPTNSVINCSHLEVLNMNHMYLTGTLPDFSPLKSLRVLDLSYNAFTGEFPMSVFNLTRLEVLNFNENGGFSLWQLPDDIDRLKNLKSMVLTTCMVYGQIPTSIGNITSLTDLELSGNFLTGQIPAELGLLKNLQQLELYYNQHLVGYIPEELGNLTELIDLDMSVNKLTGSIPASICSLPKLQVLQLYNNSLSGELPGEIENSTTLRMLSLYDNFLKGQVPSKLGQFSGMVVLDLSENSFSGPLPTQVCKGGKLLYFLVLDNMFSGKIPDSYANCMMLLRFRVSNNHLEGSVPEGLLGLPHVSIIDLSNNNLTGPIPEISGNARNLSELFLQKNMISGVIPPTISRAINLVKIDFSYNFLSGPIPSEIGNLRRLNLLMLQENKLNSSIPTSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFSGNPGLCVQPTYANSSDPSFPTCSIAHKSKRINTIWVAGVSVVLIFIGAVLFLKRRCSKETAAVKHEDTQPSSFFSYDVKSFHRISFDQREIIESLVEKNIIGHGGSGTVYKIDLKSGDTVAVKRLWSRKSKDSAPEDRMFVDKALKAEVETLGSIRHKNIVKLYCCFSSLECSLLVYEYMPNGTLWDSLHKGWVHLDWPTRYKIALGIAQGLAYLHHDLVLPIIHRDIKSTNILLDVDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSPRATTKGDVYSFGVILLELLTGKKPVESEFGENRNIVFWVSNKVEGKEGARPSDLFYPRSSPIFKDDMIKVLRIAIRCTYKAPSSRPTMKEVVQLLIEAEPRGSDSCELLTKDASNVTLL 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1024g00014 953 SMART serkin_6 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00014 953 Gene3D Ribonuclease Inhibitor 311 570 IPR032675 -
Gabi1024g00014 953 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 947 - -
Gabi1024g00014 953 PANTHER LEUCINE RICH REPEAT KINASE 2 179 933 - -
Gabi1024g00014 953 SUPERFAMILY Protein kinase-like (PK-like) 629 929 IPR011009 -
Gabi1024g00014 953 Gene3D Ribonuclease Inhibitor 26 306 IPR032675 -
Gabi1024g00014 953 SUPERFAMILY L domain-like 251 563 - -
Gabi1024g00014 953 FunFam Leucine-rich repeat receptor-like protein kinase 177 280 - -
Gabi1024g00014 953 Gene3D Transferase(Phosphotransferase) domain 1 734 946 - -
Gabi1024g00014 953 ProSitePatterns Protein kinases ATP-binding region signature. 655 677 IPR017441 GO:0005524
Gabi1024g00014 953 Pfam Protein kinase domain 651 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00014 953 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Gabi1024g00014 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Gabi1024g00014 953 FunFam receptor protein-tyrosine kinase CEPR1 632 733 - -
Gabi1024g00014 953 ProSiteProfiles Protein kinase domain profile. 649 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1024g00014 953 SUPERFAMILY L domain-like 68 354 - -
Gabi1024g00014 953 FunFam Receptor protein-tyrosine kinase CEPR1 284 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1024g00014 Gabi-Chr1024 123991 127603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1024g00014 22 936 Receptor kinase-like Gene Family AT5G49660 65.109 0.0 1203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1024g00014 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1024g00014 - - lja:Lj1g3v2096140.1 1583.54