Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1023g00012 ATGATCCATAGATCACTTCTCTCTAACAACATGGATAATGGTTGCTTCCCTTCTCCACGCCTAGATGCTTTTCCAGCAGGTTTGCGAGTTCTCGTTGTTGATGATGACCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAAAAGTGCTTTTATGAAGTGACTACATGCTGTTTAGCATCAGAGGCTCTAAAAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTAAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAACACGTCTTCAGAAAAAGGATTCACGAGGCAAGAGATTTTGAAGGTCATGAGAGTTTTGAAGGCATTCACTTAATGAGAAGTGGATCAGATCAGTCTGATGATGGTAACCTGTTTGCTTTAGAAGAAATGACCTCAATGAAGAAAAGGAAAGATGTAGATAACAAACATGATGACAAAGAATTTGGAGATCAATCTTCTACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAGATCTTCCTCAAGTGGAACAAAGCATTCAGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTGAACTCTACAAACAAGCAACAAAATGATGTTGCAATTGACAGCTTCAGCTACTCAGATGGAACCTTACAACTTCAGCATGATGCTACAAGTCATGAAGGTGATCTCAAAAAAATTGTGTCAGAGACTACAACAGAAAAAAGAAGAGCTTTGATTTGTGACATTCCAGACCCTAAGAAACGAAAGAGTTCACAGATGGGCCTTAATCACCCTTTTACACCTGTAGATTCAGAAGCAAACCATGCAGTATTTGATTGCATCATACCAACACAGTTCTCTTGGAGTGAAGTTCCAAAAAGGCCACTCAAAGAAGAACAAAAGACACTTGTTCCATTAGAGGATAGCTTAAGCCAGTTGCCATTACATGGCACGCAGCATCACATTCAGGTTAATCAATCACAATCATTTGCTTCAATCAACACCAATCCCTCTATAACAGAAGAAGAGGTTGCTGCCTGTTTAAAAACCAAACCTTTTTATGCTGATTACAAAAGTGATTATGACAGTCCTGTGAGTTCAATAGGATCTGCAGTTGATATCTTTCCTATTCAGTCCAAAAGCCTTATAGTGAATGATCAATCTTCTGAGCCCATTTTCACTTCAAATTTAGGCTTGAAAACACAGGGATTAAATCTCAGTTGCATTTCTGATCTGGAATTTTACCAAAGAAACCTACTTTTAGGTGGTGGTGGTGTGGTAGCTTCTGCACCTTTGGAGGAGGACTTGCATTTCTTTTTGCTACAAGGTGAATGCTATAATACCAACTTCGGCCTGCAAAATATAGAGATGTCAGAGTATTATGATCCAAGGCTCATTGGTGAAGTTCCTACTTATTTACATGATGCATCAGATTATTCAGTAGTAGATCAGAGTCTATTCATAGCATGA 1776 0.3885 MIHRSLLSNNMDNGCFPSPRLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYEVTTCCLASEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEARDFEGHESFEGIHLMRSGSDQSDDGNLFALEEMTSMKKRKDVDNKHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKENDQRSSSSGTKHSDSPSKDPGSFSFLNSTNKQQNDVAIDSFSYSDGTLQLQHDATSHEGDLKKIVSETTTEKRRALICDIPDPKKRKSSQMGLNHPFTPVDSEANHAVFDCIIPTQFSWSEVPKRPLKEEQKTLVPLEDSLSQLPLHGTQHHIQVNQSQSFASINTNPSITEEEVAACLKTKPFYADYKSDYDSPVSSIGSAVDIFPIQSKSLIVNDQSSEPIFTSNLGLKTQGLNLSCISDLEFYQRNLLLGGGGVVASAPLEEDLHFFLLQGECYNTNFGLQNIEMSEYYDPRLIGEVPTYLHDASDYSVVDQSLFIA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1023g00012 591 FunFam Two-component response regulator 206 269 - -
Gabi1023g00012 591 MobiDBLite consensus disorder prediction 270 299 - -
Gabi1023g00012 591 SUPERFAMILY CheY-like 27 151 IPR011006 -
Gabi1023g00012 591 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 305 IPR045279 GO:0009736
Gabi1023g00012 591 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Gabi1023g00012 591 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Gabi1023g00012 591 Gene3D - 206 269 - -
Gabi1023g00012 591 Pfam Response regulator receiver domain 30 139 IPR001789 GO:0000160
Gabi1023g00012 591 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Gabi1023g00012 591 CDD REC_typeB_ARR-like 30 144 - -
Gabi1023g00012 591 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Gabi1023g00012 591 SMART REC_2 28 140 IPR001789 GO:0000160
Gabi1023g00012 591 Gene3D - 28 198 - -
Gabi1023g00012 591 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1023g00012 Gabi-Chr1023 117751 122091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1023g00012 21 276 Response Regulator Gene Family AT2G25180 55.212 6.81e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi1023g00012 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1023g00012 K14491 - gmx:100778324 980.704