Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1023g00008 ATGGGTCGTCGAAAAATTGAGATTACGATGGTGAAGGACACCAACACGAGGCAAGTCACATTCTCAAAGCGTCGAACAGGTCTATTCAAGAAAGCAAATGAGTTATCCATTTTATGTGGGGCTGAAGTTGCTATTGTTGTATTCTCCCCTGGGAATAAGCCTTACTCATTTGGGCACCCAAGTGTTGATGCTATTGCAGCCAAGTTTCTTCAACAAGAGCCCAAATCAAATGATGCACAAGAAAACCCTCTTCCGAAGTTGCTAAACCAACAACTTGCAGAGGTGATGGACATGGTTCGTGAGGATGAAAAAAAGGGTGAGGTCTTTAATGAGGCCCTAAATCAATACAAAGTGGCCCAACACTCTCAACTTGAAGATTTGCATAGTTCTCTTGTTGAGTTCAAGTATGATGTAAACAAGCGTCTTAGTGAAATTGAAGCATCAGAATCTATGCTACTCCTTGGACAACAACCTGTAGAGGGAATAAAAAACCATGTTGCTAAAAAGAAAAGAAGAAAAATGTGA 525 0.4076 MGRRKIEITMVKDTNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDAIAAKFLQQEPKSNDAQENPLPKLLNQQLAEVMDMVREDEKKGEVFNEALNQYKVAQHSQLEDLHSSLVEFKYDVNKRLSEIEASESMLLLGQQPVEGIKNHVAKKKRRKM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1023g00008 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1023g00008 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1023g00008 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1023g00008 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1023g00008 174 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Gabi1023g00008 174 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Gabi1023g00008 174 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Gabi1023g00008 174 PANTHER MADS BOX PROTEIN 3 139 - -
Gabi1023g00008 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gabi1023g00008 174 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Gabi1023g00008 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1023g00008 Gabi-Chr1023 93337 93861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1023g00008 1 113 Type I MADS-box Gene Family AT2G34440 51.240 2.28e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1023g00008 SRF-TF 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1023g00008 - - gmx:100791127 196.823