Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1023g00007 ATGGGTCGTCGAAAAATTGAGATTGCAATGGTGAAGGACACCAACACGAGGCAAGTCACATTCTCAAAGCGTCGAACAGGTCTATTCAAGAAAGCAAATGAGTTATCCATTTTGTGTGGGGCTGAGGTTGCTATTGTTGTATTCTCTCCTGGGAATAAGCCTTACTCATTTGGGCACCCAGGTGTTGATGCTGTTGCGAACAATTTTTTTCAACAAGAGCCCAAATCAGGTGATGTGATCCAAGGCAACCCCTCTTCCGAAGGTGTTAACTTGGGCAAGCTAAACAAAGAATATGCTGATGTGATGGACTTGGTGCGTGAGGATGAGAATAAGGGTGAGGTCCAAAAGGCCTTAGATAAATACCAACTGACCCAACTCTCTGAGCTTCAAGAATTTTCTAGTTCACTAAAAGAGTTCAAGTATCATGTAAACAAGCGTCTTAGTGAATTTGAAGCATTGGAATCTATGCTACTCCTTGCACAAGAGCCTGTGGAGGGGATAGAAAATCTTGTTGCCAAAAAGAAAAGAAGAAAAAATTGA 540 0.4204 MGRRKIEIAMVKDTNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDAVANNFFQQEPKSGDVIQGNPSSEGVNLGKLNKEYADVMDLVREDENKGEVQKALDKYQLTQLSELQEFSSSLKEFKYHVNKRLSEFEALESMLLLAQEPVEGIENLVAKKKRRKN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1023g00007 179 PANTHER MADS BOX PROTEIN 3 144 - -
Gabi1023g00007 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1023g00007 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gabi1023g00007 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi1023g00007 179 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Gabi1023g00007 179 CDD MADS 2 60 - -
Gabi1023g00007 179 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Gabi1023g00007 179 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Gabi1023g00007 179 Coils Coil 172 179 - -
Gabi1023g00007 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1023g00007 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1023g00007 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1023g00007 Gabi-Chr1023 78201 78740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1023g00007 1 161 Type I MADS-box Gene Family AT2G34440 40.000 7.11e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1023g00007 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1023g00007 - - gmx:100791127 183.726