Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1013g00005 ATGGACTGCAGACTTGAGTGCTCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCATATGAGGATCTCATACCATTCGGTTCATGAACCAATCTGTGGCATTTGCAGGAAACATTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAGTGCAGAGATATTTTTGCCTACAGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGATAGCCCTAACTCTCGAAGGATCCACCAAGAAAATTGCCAACTCTCTGGAATAAATAGAATACTTGTTGGTCGCTTTTCAAACTTGGGTATTCGTGATAATTTGACTATTGGTGGGGGAGGAAGAGGACCACAAGTTGTTGCACTAGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGTTCATTGGATCTCTGTGCAAGAGTCTGCATAATCGATGAGCACGAGAACATAATTTTCCACTCTTATGTGAAGCCATCAATTCCAATCACAAACTACAGGTATGAGTCTACAGGCATTAGACAAGAATACTTGAGGGATGCAATGCCAATGAAACAAGTTCAGAGGAAGATTCAGGACTTTCTTTGCAACGGAGAACCTATGTGGACAATTCGAGCAAGAGGCGGAAAAGCCAGGATTCTTGTGGGTCATGGTTTAGATCATGATCTAGAATGTTTACAAATAGAATATCGAGCAGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACGAGCAAGCTGAGCAACTCACTCAAGTACTTAACACAAGCATATCTTGGGTATGACATTCAAACTGGGATACAGGATCCTTACGATGATTGTGTTGCAACAATGAGGCTCTACATGAGAATGAGATCCCAAGTACACAAAATAGAGGATTATCCATTGGCATCCGACGCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGTTGGTGCTTGGATTCCTTATATAGTCCCTGA 1071 0.422 MDCRLECSETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPICGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVLDSPNSRRIHQENCQLSGINRILVGRFSNLGIRDNLTIGGGGRGPQVVALACKMVGGGSDGSLDLCARVCIIDEHENIIFHSYVKPSIPITNYRYESTGIRQEYLRDAMPMKQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVATMRLYMRMRSQVHKIEDYPLASDAQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSLYSP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1013g00005 356 Pfam Exonuclease 149 296 IPR013520 -
Gabi1013g00005 356 SMART exoiiiendus 131 305 IPR013520 -
Gabi1013g00005 356 FunFam RNA exonuclease 4 128 315 - -
Gabi1013g00005 356 SUPERFAMILY Ribonuclease H-like 145 301 IPR012337 -
Gabi1013g00005 356 CDD REX4_like 133 296 IPR037431 GO:0006364|GO:0008408
Gabi1013g00005 356 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Gabi1013g00005 356 Gene3D - 130 316 IPR036397 GO:0003676
Gabi1013g00005 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Gabi1013g00005 356 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 351 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1013g00005 Gabi-Chr1013 151430 154170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1013g00005 1 353 C2H2 Transcription Factor Family AT3G27970 76.124 0.0 579